Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1412 ATGGCAAAGCTTCCACCTATGTTTTCCCTGAGGCACTTCCTGGTGGTGTCGCTGGCTCTGAATGTGAGCTTGATCCTGAGAACGGTGTATTATGAGAGTGAAGAAAGAAGCAAGGGGTTTTGTATGAAGAAAAAACTGATGACAGATGCGGATTCAAATGGAGAGGGGCATCTTATCCACAAATCACGTTTGGCCATATCCTCTACTTCGTCTCTCGTTAATTCTACTTGTGCGGATCATCCAGCAGGAAGGGAAAGATTGATCAACTTGGACCATGGAGATCCAACAATGTATGAAAGATTTTGGCGACAACTGGGTGACAAGACCACAATCATAATTCCAGGATGGCAATCTATGAGTTATTTTTCTGATGCCTCAAACATTTGCTGGTTTTTGGAGCCTGAGTTTGCGAAGGAGGTAGTGAGGTTGCACAAAGTGGTGGGCAATGCTGTGACAGAAGGTCGCCATATTGTTGTTGGGACAGGTTCCTCTCAGCTAATTCTGGCTGCCCTTTATGCTCTGTCCTCGCCTGATGCTGCTGAACCAATCAACGTGGTATCTGCCGCACCCTATTATTCGTCCTACCCATCAATGGCAAATTACCAGAAATCAGGCCTTTACAAATGGGCTGGTGATGCAGAGAATTTTGACAAGGAGGGTCCTTACATCGAGCTGGTTACTTCTCCCAATAACCCTGATGGATATACAAGGCGATCAATGGTCAACCGAAGCCAGGGACTATTGATTCATGACCTTGCCTATTATTGGCCGCAATACACTCCAATATCATCCCCTTCAGATCATGATCTCACGCTTTTCACTGTCTCAAAAAGCACTGGTCATGCAGGAATGCGCATAGGGTGGGCTATTGTCAAAGATAAAGAGTTAGCAAAGAAAATGACGAAATTCATAGAGCTAAATACAATTGGTGTCTCGAAGGATTCTCAACTCAGAGCTGCCAAGGTTTTAAAGGTAGTGTCTGACAGCTGCGAACAAGAAAACTCCCAAGATGGGGAATCATTTTTCAAGTACAGCTACAAGCTCATGGCGCAAAGGTGGAAGCAACTGAGAGCAGCAGTCGAGGCCGGTGATTTGTTCACTTTGCCCCAATTTTCTCCTGCATTCTGCACCTTCTTTGGCCAGGAGATGGGGCCTCAACCAGCTTTCATGTGGTTGAAGTGTGAGGGAGATATAGAGGACTGCGAAAGCTTCCTTCGAGgacacaaaattttaacaagaaGTGGGAGACACTTTGGGGCTAGCCCAAAATACGTTAGAATTAGCATGCTGGATACAGATGAAACTTTTATACAGTTAATAGGTAGACTATCAGCCTTACAAGAGCAAGAATGA 1353 0.4472 MAKLPPMFSLRHFLVVSLALNVSLILRTVYYESEERSKGFCMKKKLMTDADSNGEGHLIHKSRLAISSTSSLVNSTCADHPAGRERLINLDHGDPTMYERFWRQLGDKTTIIIPGWQSMSYFSDASNICWFLEPEFAKEVVRLHKVVGNAVTEGRHIVVGTGSSQLILAALYALSSPDAAEPINVVSAAPYYSSYPSMANYQKSGLYKWAGDAENFDKEGPYIELVTSPNNPDGYTRRSMVNRSQGLLIHDLAYYWPQYTPISSPSDHDLTLFTVSKSTGHAGMRIGWAIVKDKELAKKMTKFIELNTIGVSKDSQLRAAKVLKVVSDSCEQENSQDGESFFKYSYKLMAQRWKQLRAAVEAGDLFTLPQFSPAFCTFFGQEMGPQPAFMWLKCEGDIEDCESFLRGHKILTRSGRHFGASPKYVRISMLDTDETFIQLIGRLSALQEQE 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1412 450 CDD AAT_like 134 443 - -
Ssu6g1412 450 PANTHER TRYPTOPHAN AMINOTRANSFERASE-LIKE PROTEIN 3 448 - -
Ssu6g1412 450 SUPERFAMILY PLP-dependent transferases 82 445 IPR015424 -
Ssu6g1412 450 Gene3D Aspartate Aminotransferase, domain 1 339 447 IPR015422 GO:0003824
Ssu6g1412 450 Pfam Allinase 88 446 IPR006948 GO:0016846
Ssu6g1412 450 Gene3D - 133 336 IPR015421 GO:0003824
Ssu6g1412 450 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 3 448 - -
Ssu6g1412 450 Gene3D - 55 128 IPR037029 GO:0016846
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1412 Ssu-Chr6 23165955 23184488 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1412 K16903 - gmx:100777098 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1412 6 23165955 23184488 Ssu6g1412 6 23165955 23184488 ECH
Ssu6g1412 6 23165955 23184488 Ssu1g2264 1 64171844 64179727 PCT