Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2264 ATGGCTAAGCTTCCTACTGTGTTGTTCTCTTTGAGGCACTTCCTGGTGCTGTCCCTCGCCTTGAACGTGAGCCTGATACTGAGATTAATGGTGTACGAAGGTGAAGAAGCCCACAACCATTCTTGTTTGGAAACAGAAAGAGGGACCTCGATTTCAAGAACCAATTCTAACACGGAGGGGCGTAGTGTCCACAAATCACGCATGGTTATATCATCATCAACTTCGTCCTTGCCGGATTCTACTTGCACGGAACAAACAGGGCGCGGGAATAGAGTGATCAACCTCGACCATGGAGACCCGACAGTGTATGAGAGATTTTGGCGACAAACGGGTGACAAGAGCACGATCGTAATCCCGGGATGGCAGTCAATGAGTTATTTTTCTGATGTTACCAACATTTGCTGGTTTTTGGAGGCAGAGTTTGCGAGGGAAGTGGTGAGGTTGCACAAAGTGGTGGGCAATGCAGTCACAGAAGGGCGTCACATTGTTGTTGGGACAGGTTCATCTCAGCTCTTTCTCGCTGCTCTCTATGCTCTGTCCCCAACTGATGCACCTGAGCCAATCAGTGTCGTCTGTGCCTCACCCTACTACTCGTCGTACCCATCAATGACGGATCACCTGAAATCGGGCCTTTACAAATGGGCTGGTGATGCAGAAAGTTTTGAGAAAGAGGGTCCCTACATTGAGCTGGTTACTTCTCCCAATAATCCGGATGGACATGTAAGAAGATCTAAGGTCAACAGAAGCCAGGGATTTTTGGTCCATGACCTTGCCTATTACTGGCCACAGTACACTCCAATATCAGCGCCTGCAGATCATGATCTAATGCTTTTCACTGTCTCAAAAAGCACTGGTCATGCAGGAATGCGCATAGGGTGGGCTCTTGTGAAAGACCAAGAGGTAGCAAAGAAAATGACTAAATTCATAGAGCTGAATACAATTGGAGTGTCAAAGGATTCGCAACTCAGGGCTGCTAAGGTTTTAAGGGCAGTTTCTGATAGCTGGGAACAAGGAAACTCACGTGAGGGCGAGTCATTCTTCAAGTTCAGCCACAAACTCATGGCCAACAGGTGGAAGCAACTGAGACTAGTGGTGGAGCGTAGCGGATTGTTCAGTTTGCCTAATTTTTCTCCAGCATTCTGCACCTTTTTCAATCAGGTGTTGGAGCCTCAACCAGCTTTTGTGTGGTTAAAGTGTGAGGGAAACGTGGAAGACTGCGAAAGCTTCCTTCGAGCACACAACATCATAACGAGAAGTGGAACGCACTTTGGGGTTAGCCCAAAATACGTAAGAATTAGCATGTTGGATACTGACGAAAATTTTAACCAGTTTCTAGATAGACTTTCTGCCATACAGTCGCGATAG 1365 0.4711 MAKLPTVLFSLRHFLVLSLALNVSLILRLMVYEGEEAHNHSCLETERGTSISRTNSNTEGRSVHKSRMVISSSTSSLPDSTCTEQTGRGNRVINLDHGDPTVYERFWRQTGDKSTIVIPGWQSMSYFSDVTNICWFLEAEFAREVVRLHKVVGNAVTEGRHIVVGTGSSQLFLAALYALSPTDAPEPISVVCASPYYSSYPSMTDHLKSGLYKWAGDAESFEKEGPYIELVTSPNNPDGHVRRSKVNRSQGFLVHDLAYYWPQYTPISAPADHDLMLFTVSKSTGHAGMRIGWALVKDQEVAKKMTKFIELNTIGVSKDSQLRAAKVLRAVSDSWEQGNSREGESFFKFSHKLMANRWKQLRLVVERSGLFSLPNFSPAFCTFFNQVLEPQPAFVWLKCEGNVEDCESFLRAHNIITRSGTHFGVSPKYVRISMLDTDENFNQFLDRLSAIQSR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2264 454 Gene3D - 137 336 IPR015421 GO:0003824
Ssu1g2264 454 CDD AAT_like 140 448 - -
Ssu1g2264 454 Pfam Allinase 93 451 IPR006948 GO:0016846
Ssu1g2264 454 SUPERFAMILY PLP-dependent transferases 92 450 IPR015424 -
Ssu1g2264 454 Gene3D - 45 133 IPR037029 GO:0016846
Ssu1g2264 454 PANTHER TRYPTOPHAN AMINOTRANSFERASE-LIKE PROTEIN 4 453 - -
Ssu1g2264 454 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 4 453 - -
Ssu1g2264 454 Gene3D Aspartate Aminotransferase, domain 1 337 454 IPR015422 GO:0003824
Ssu1g2264 454 MobiDBLite consensus disorder prediction 46 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2264 Ssu-Chr1 64171844 64179727 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2264 K16903 - gmx:100807013 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2264 1 64171844 64179727 Ssu1g2264 1 64171844 64179727 ECH
Ssu6g1412 6 23165955 23184488 Ssu1g2264 1 64171844 64179727 PCT