Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1409 ATGAAGGCAACACTACGATACTTAGCAGGCATTGCTGGCCCTAGTGGTTTCGGCTCAAATTCAACAGCTGAGCAAGTCACTGAAGATTGCTCTTCCTTGCTCCCTTCCAATCTAACTGCTCTGATCACTGgTGCGACTTCTGGTATTGGAGCTGAAACAGCTAGAGTGTTAGCAAAGAGAGGAGTAAGGGTTGTGATTGGTGCCAGGGACTTGAGAAAGGCCAGGGAAGTGAGAGAGAAAATCCAAAAGGAGAGTCCTAATGCCGAGGTTATTCTGTTGGAGATTGATCTTAGCTCTTTTGCTTCTGTACAGAGATTTTGTTCAGAGTTTTTAGCTTTAGAACTGCCCCTTAATATTCTCatAAACAATGCAGGAATGTACTCTCAAAACTTGGAGTTCTCCGaagagaaaattgaaatgacATTTGCTACAAATTACTTAGGAcattttttgttaacaaaaatgCTACTAGAGAAAATGATAGATACTACAAAGAAGACAGGCATTCAAGGAAGAATAATAAACGTTTCTTCTGTGATTCATAGCTGGGTGAAAAGATCTGGTTTTTGTTTCAACGACATGCTCTGCGGAAAAAATTATAATGGCACACGCGCATATGCTCAGTCAAAATTGGCCACAATTCTGCATGTGAAGGAAGTGGCCAGACAGCTGAAGGAAAGGAATGCAAATGTAACTATTAACGCAGTGCATCCAGGCATTGTAAAGACGGGAATTATTAGAGCACATAAGGGCTTAATAACGGATTCCCTGTTTTTCATCGCATCGAAGTTACTGAAATCGATATCACagGGTGCATCAACAACGTGCTATGTTGCTCTAAGCAGGCAAACAGATGGGATGAGTGGGAAATATTTTACTGATTGTAATGAGAGCAACTGCTCAAGTCTAGCAAATGACGAATCAGAAGCTAAAAAGTTATGGAACGACACCCATGCCTTGCTTCACAAACGGCTACGTCAAGCAGCAAATTGA 993 0.4018 MKATLRYLAGIAGPSGFGSNSTAEQVTEDCSSLLPSNLTALITGATSGIGAETARVLAKRGVRVVIGARDLRKAREVREKIQKESPNAEVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTTKKTGIQGRIINVSSVIHSWVKRSGFCFNDMLCGKNYNGTRAYAQSKLATILHVKEVARQLKERNANVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSRQTDGMSGKYFTDCNESNCSSLANDESEAKKLWNDTHALLHKRLRQAAN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1409 330 PANTHER RETINOL DEHYDROGENASE 4 326 - -
Ssu6g1409 330 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 326 - -
Ssu6g1409 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Ssu6g1409 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 298 IPR036291 -
Ssu6g1409 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Ssu6g1409 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Ssu6g1409 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Ssu6g1409 330 Gene3D - 31 326 - -
Ssu6g1409 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Ssu6g1409 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Ssu6g1409 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Ssu6g1409 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Ssu6g1409 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Ssu6g1409 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1409 Ssu-Chr6 23089710 23092842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1409 39 245 Acyl Lipid Metabolism Gene Families AT1G63380 28.972 2.70e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1409 - - gmx:100776567 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1409 6 23089710 23092842 Ssu6g1409 6 23089710 23092842 ECH
Ssu6g1409 6 23089710 23092842 Ssu1g2259 1 64001563 64005342 PCT