Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2259 ATGAAGGCAACACTAAGATACTTAGCGGGAATTGCAGGTCCTAGTGGTTTTGGCTCAAATTCAACCGCTGAACAAGTTACTGAAGATTGTTCTTGGTTCCTTCCTTCTGGTCTAACCGCTCTGATCACTGgGGCGAGTTCTGGTATTGGAGCTGAAACAGCTAGGGTGTTAGCAAAGAGAGGAGTGAGAGTTGTGATTGCTGCGAGGGACTTGAAGAAGGCCAGGGAAGTGAGAAAGAACATACAAAAGGAGAGTCCAAAAGCTGAGGTTATTCTGTTGGGGATTGATCTTAGCTCTTTTGGTTCCGTACAGAGATTTTGTTCCGAGTTCTTAGCTTTAGAACTCCCCCTTAATATTCtcatAAACAATGCAGggatattttctcaaaatttggaGTTCTCtgaagaaaaaattgagatGACATTTGCCACAAATTACTTAGGTCATTTTTTATTGACAGAAATCTTATTAGACAAAATGATAGAAACGGCAGAGAAGACAAGTATTCAAGGAAGAATAATAAACGTTTCTTCGGTCATTCATAGCTGGGTGAAGAAAGATGGTTTTCGTTTCAACGACATACTCAGTGGAAAAAACAGATATAATGGCACACGCGCTTATGCCCAGTCAAAATTGGCAAATATTTTGCATGCCAAGGAAATAGCCAAGCAACTCAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGTACATCCAGGCATTGTGAAGACAGGAATTATTAGAGCTCATAAGGGCTTAATAACGGATTCCCTATTTTTTATTGCATCAAAGTTACTCAAAACGACATCACAGGGTGCATCAACTACGTGTTATGTTGCTCTGAGCCCAAAAACAGAAGGGATAAGTGGAAAATACTTTGCAGATTGTAATGAGAGCAAGTGCTCAAGTCTAGCAAATGACGAATCGGAAGCTAAAAAGCTGTGGAACAACACCCATGCCTCGCTTCACAAACGACTACGTCAAGCAACAATTTGA 996 0.3936 MKATLRYLAGIAGPSGFGSNSTAEQVTEDCSWFLPSGLTALITGASSGIGAETARVLAKRGVRVVIAARDLKKAREVRKNIQKESPKAEVILLGIDLSSFGSVQRFCSEFLALELPLNILINNAGIFSQNLEFSEEKIEMTFATNYLGHFLLTEILLDKMIETAEKTSIQGRIINVSSVIHSWVKKDGFRFNDILSGKNRYNGTRAYAQSKLANILHAKEIAKQLKARNARVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKTTSQGASTTCYVALSPKTEGISGKYFADCNESKCSSLANDESEAKKLWNNTHASLHKRLRQATI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2259 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Ssu1g2259 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Ssu1g2259 331 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 226 IPR002347 -
Ssu1g2259 331 PANTHER RETINOL DEHYDROGENASE 4 327 - -
Ssu1g2259 331 Pfam short chain dehydrogenase 39 180 IPR002347 -
Ssu1g2259 331 Pfam short chain dehydrogenase 196 247 IPR002347 -
Ssu1g2259 331 CDD retinol-DH_like_SDR_c_like 37 315 - -
Ssu1g2259 331 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 299 IPR036291 -
Ssu1g2259 331 Gene3D - 34 326 - -
Ssu1g2259 331 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 327 - -
Ssu1g2259 331 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Ssu1g2259 331 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Ssu1g2259 331 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Ssu1g2259 331 PRINTS Glucose/ribitol dehydrogenase family signature 230 247 IPR002347 -
Ssu1g2259 331 PRINTS Glucose/ribitol dehydrogenase family signature 207 226 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2259 Ssu-Chr1 64001563 64005342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2259 39 295 Acyl Lipid Metabolism Gene Families AT3G46170 27.881 3.91e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2259 - - gmx:100799729 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2259 1 64001563 64005342 Ssu1g2259 1 64001563 64005342 ECH
Ssu6g1409 6 23089710 23092842 Ssu1g2259 1 64001563 64005342 PCT