Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1393 ATGGATCCTGAAGCAATGCGTCAATGCATGAGCTTTGGATTTTCGGACAAGTCAAAAATTGCAATTGGGCAGTATGGAAATGGCTTCAAGACTGGTACTATGAGACTGGGTGCGGATGTCATTGTCTTCAGCCGCCACCTGAATAACATGATATTGACTCAAAGCATTGGACTTCTGTCTTATACATTCTTGATGCAAACACAGCATGACAGAATTGTAGTCCCCATGGTGGATTATAAGTTTGATTCAACTGGAAACTTGGAAATACTAAATGACAAAGAGCATTTTGAGTCTAATTTGTCTGTACTATTGCGCTGGTCTCCATACCTATCAGAAGCAAAACTTCTAGAACAAGCTTACATGTCCATATTGTACTTGCGGATACCAGAAAGTTTTAGAATTATATTGCGAGGGCAAGTTGTGAAGCTACATAACATTGCAGATGAACTTAGATATACTGAATTTATCTTGTATAGACCACACAGTGGTTGCTCTGAAGAGGCAATAACTGTAACAACAATTGGATTTGTTAAGGAAGCTCCTGAAGTGAACATCCATGGCTTCAATGTATATCACAAAAATCGGCTGATACTGCCATTTTGGCAGGTTGTGAACTATTCAAATAGTAGGGGTAAAGGTGTTGTTGGTATCTTGCGAGCTGATTATCTTGAGCCAACTCATAATAAACAAGATTTTGAGAAAAGTTCCCTGTTTCAAAAACTTGGACTACGCCTGAAGCAAATGACATGGGACTACTGGGATAATCACTGTCATCTAATTGGGTATTGTGAAAGGAGGACTGGAGTTCCAGCTGCATCTCTTAATAAGAGGAAGACACATGGATCTATAGAGCTTCATAAGATGAAAAGGCAAgcaattgaagaaaattttactGTTGCTGGATGCGATCAGAATGTGCTGACTACTGCTTTTCCTACAGACCAGACGGTAGACCGAGAagttataaaattgattcaaatgaacaaaaaactcttaaaacaATGTTTGGAACTTGAAAAGGCAGAGAAAGAACTTAATCTTAAGGTTACGCAGCTTAGAAGTAAAATTCAGAAAGCTCAGCGCGAGTATAATAGACTTTTGGAAGTACAGTCCCTTGAATTATGGGAAGAAAAAGGGGGTGTGTAG 1146 0.377 MDPEAMRQCMSFGFSDKSKIAIGQYGNGFKTGTMRLGADVIVFSRHLNNMILTQSIGLLSYTFLMQTQHDRIVVPMVDYKFDSTGNLEILNDKEHFESNLSVLLRWSPYLSEAKLLEQAYMSILYLRIPESFRIILRGQVVKLHNIADELRYTEFILYRPHSGCSEEAITVTTIGFVKEAPEVNIHGFNVYHKNRLILPFWQVVNYSNSRGKGVVGILRADYLEPTHNKQDFEKSSLFQKLGLRLKQMTWDYWDNHCHLIGYCERRTGVPAASLNKRKTHGSIELHKMKRQAIEENFTVAGCDQNVLTTAFPTDQTVDREVIKLIQMNKKLLKQCLELEKAEKELNLKVTQLRSKIQKAQREYNRLLEVQSLELWEEKGGV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1393 381 Coils Coil 324 369 - -
Ssu6g1393 381 PANTHER PROTEIN MICRORCHIDIA 6 274 369 - -
Ssu6g1393 381 Pfam Morc6 ribosomal protein S5 domain 2-like 118 253 IPR041006 -
Ssu6g1393 381 PANTHER PROTEIN MICRORCHIDIA 6 1 118 - -
Ssu6g1393 381 PANTHER PROTEIN MICRORCHIDIA 6 118 265 - -
Ssu6g1393 381 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 1 118 IPR045261 GO:0016887
Ssu6g1393 381 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 118 265 IPR045261 GO:0016887
Ssu6g1393 381 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 274 369 IPR045261 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1393 Ssu-Chr6 22852626 22878445 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1393 - - gmx:100779850 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2250 1 63825425 63839966 Ssu6g1393 6 22852626 22878445 ECH
Ssu6g1393 6 22852626 22878445 Ssu6g1393 6 22852626 22878445 ECH