Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2250 ATGGGCCCTACAGAAATCGTGGATTTATCTAGTGATGATGAAAGTGAAAAGGTTGGTTTCAAAGATGTTAAGTTGGAGGACGATTTTGTTATGGATGCAAAGCAATATAACGAGCCTGACAAAGGTCAACTAGCCAAGCATAAGAGATCTCGAAGTCATACTACTACTGGACAAGATTCTGAAGAAAATATAAGTTCTAATGGTCCGAGTACAGGTCATAGCAACTCCAGTGTATTGGAGCAGGGACCGTCACCAATTGATGACACTGGCATTTCTTATGTGTCACCCATTGGTGCAGCACCCCTGTGTAGGCAGTTTTGGAAAGCTGGAAACTATGATGATGGGCCTGGTTCTAAAGTCACAGTACAAAATGCTAAAAATTATCTACACGTGCACCCCATGTTCCTTCACTCAAATGCAACTTCGCATAAGTGGGCATTTGGTGCCATAGCAGAGCTTCTTGATAATGCTGTTGATGAGATCCAAAATGGGGCTACCTTTGTCATTGTAGATAAAACTTCAAATCCAAGGGATGGAAGTCCAGCATTGTTGATTCAAGATGACGGTGGTGGGATGGATCCGGAAGCAATGCGTCGTTGCATGAGTTTTGGATTTTCAGATAAGAAGTCACAGTTTGCTATTGGACGGTATGGGAATGGCTTCAAGACCAGTAGTATGCGGCTTGGTGCAGATGTCATAGTCTTCAGTTGCCAACTAAATAATAGGATTTTGACTCAAAGCATTGGACTTCTGTCATATACGTATTTGACGCAAACACAGCTTGACAGAATAGTAGTGCCCATGGtgaattatgagtttaatatgtcaactggatcattgaaaatattaaatggcAACGAGCATTTTGTGGCTAATTTATCCTTGTTGGTACGGTGGTCACCATATTCATCAGAAGCAGATCTTCTGAAACAATTTGATGACATTGGATCTCATGGTACTAAAGTTATTATCTATAATTTGTGGTGCAATGACGATGGGAATTTGGAGTTAGACTTTGATACAGATCCTACgGATATTCGTATTGCTGGGGATATCAAGCAGATTGATACACTTAAAGCCTGGAAGAGTGTAAATGAGGAGCACATTGCTAATCGGTTTCGTTACTCTTTACATGTATATATGTCCATATTGTACTTGAAGATACCGGAAAGTTTTCAAATTGTACTGCGAGGGCAAGTTGTGAAGCCACACAACATTGCTGATGATCTTAAATATCCTCAATTTGTTAAATATGCACCACAAATTGGTGGATCTGTAAAGGGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGAAGCTCCTCAAGTAAATATCCATGGTTTCAATGTATATCACAAAAATCGGCTTATACTGCCATTTTGGCAGGTCGTAAGCTATTTGGACAGTAGGGGTAGAGGAGTTGTTGGTATCTTGCAAGCAGATTTTATTGAGCCAACCCATAACAAACAAGATTTTGAGAGAACTTCCCTGTTTCAAAAGCTTGAAGGGCGATTGAAGGAGATGACATGGGAATACTGGGATACACATTGTACATTGTTTGGGTATAAGGAAAAGAGGAAGCTTCCACCTGGGGTTACCGCACTGCATCCATCAATACAGAAACCACTTGTTATAGAAAAACCGGTCATACTGAACAAAAGTTCCTCCGCTGTTGTCAATACAAAAGCAGTATATGGGAATTTTGAACAGTGCTCCACAAATCTGCAAATAAGCTCCGAGCAAGGTTCTCATAAGAGGAAGACACATGAACTGGTAGACCTTCAGAATATGAAAAAGCATGCAAGGAATCAGAATGTAACCCATGTTGGTTTCAGTCAGAATAAACAGACCATTGCAACTCCAGCTGAACAGGTGGTGGACCAAAAGACTATATACTTGATGCAACAAAACAAGCAACTGCATGCAAAATGTTTAGAATTTGAAAAGACAGGAGAAGAACTTAATCTCAAGGTGACAAAGCTTAGAAGTAAAATACAAGAAGCCCGAGATCAGTATAATCAGCTTTTGGCTGAAATGAAGTCCCTAGACGTGAAAGAAGAGTGGTAG 2073 0.3951 MGPTEIVDLSSDDESEKVGFKDVKLEDDFVMDAKQYNEPDKGQLAKHKRSRSHTTTGQDSEENISSNGPSTGHSNSSVLEQGPSPIDDTGISYVSPIGAAPLCRQFWKAGNYDDGPGSKVTVQNAKNYLHVHPMFLHSNATSHKWAFGAIAELLDNAVDEIQNGATFVIVDKTSNPRDGSPALLIQDDGGGMDPEAMRRCMSFGFSDKKSQFAIGRYGNGFKTSSMRLGADVIVFSCQLNNRILTQSIGLLSYTYLTQTQLDRIVVPMVNYEFNMSTGSLKILNGNEHFVANLSLLVRWSPYSSEADLLKQFDDIGSHGTKVIIYNLWCNDDGNLELDFDTDPTDIRIAGDIKQIDTLKAWKSVNEEHIANRFRYSLHVYMSILYLKIPESFQIVLRGQVVKPHNIADDLKYPQFVKYAPQIGGSVKGTALTVTTIGFLKEAPQVNIHGFNVYHKNRLILPFWQVVSYLDSRGRGVVGILQADFIEPTHNKQDFERTSLFQKLEGRLKEMTWEYWDTHCTLFGYKEKRKLPPGVTALHPSIQKPLVIEKPVILNKSSSAVVNTKAVYGNFEQCSTNLQISSEQGSHKRKTHELVDLQNMKKHARNQNVTHVGFSQNKQTIATPAEQVVDQKTIYLMQQNKQLHAKCLEFEKTGEELNLKVTKLRSKIQEARDQYNQLLAEMKSLDVKEEW 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2250 690 Coils Coil 653 687 - -
Ssu1g2250 690 MobiDBLite consensus disorder prediction 32 90 - -
Ssu1g2250 690 Gene3D - 123 326 IPR036890 -
Ssu1g2250 690 Coils Coil 586 606 - -
Ssu1g2250 690 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 148 241 - -
Ssu1g2250 690 PANTHER HISTIDINE KINASE-, DNA GYRASE B-, AND HSP90-LIKE ATPASE FAMILY PROTEIN 4 685 - -
Ssu1g2250 690 Pfam Morc6 ribosomal protein S5 domain 2-like 375 515 IPR041006 -
Ssu1g2250 690 MobiDBLite consensus disorder prediction 57 83 - -
Ssu1g2250 690 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 4 685 IPR045261 GO:0016887
Ssu1g2250 690 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 146 349 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2250 Ssu-Chr1 63825425 63839966 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2250 - - gmx:100795667 1235.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2250 1 63825425 63839966 Ssu6g1393 6 22852626 22878445 ECH
Ssu1g2250 1 63825425 63839966 Ssu1g2250 1 63825425 63839966 ECH