Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1386 ATGCAATCGTTGTCGTTAAGTATGAGTCTGAGCCTGAGGAGTAGTTTGGCGAATTTTCTGTTGCTGGGTTCGGAGGCGAGAGTGCGAAGAAGGAGTGTCATCGTAGCTTGTGCTTCGGAGGGAGAGAGTGGTAGCACCAGCTCCTTTCTCTCTCGGACCCAAACCTACGCCCTTCTAAAGCAACAATTGCAAGTAGCTGCTAAATCTGAGGATTACAAGGAAGCAGCTAGAATTCGAGACTCGTTAAAGTTATTTGAGGATGAGGAGCCTGTTTTGCGTCTGAGGAGACTATTGAAGGAAGCAGTGGCTGAAGAGAGATTCCAGGATGCAGCTAATTATCGTGATGAGCTAAAAAAGATTGCCCCACACTctcttttaaaatgtttcagTGATGCTACAACATTGGGAATCAGGGTTCAAGTTAGGAGTGTATATATAGAGGGCAGAAGTCATCCTTCAAGGGGGCTATACTTCTTTGCATATAGAATAAGAATTACCAATAACTCAGACCACCCTGCTCAACTTCTTAGAAGGCATTGGATTATAACTGATGCTAATGGGAGAACGGAAAATGTCTGGGGAATTGGAGTTGTTGGTGAACAGCCATTAATACTTCCCGGGAATAGTTTTGAATACTCTTCAGCATGTCCACTGAGCACACCAAATGGTAGAATgGAAGGCGACTTTGAGATGATCCATGTTGATAGAGTAGGCTCACGATCATTCAATGTGGCCATTGCCccgttttctctctctctgctTGGAGATGATGACGGttctattatttga 789 0.4195 MQSLSLSMSLSLRSSLANFLLLGSEARVRRRSVIVACASEGESGSTSSFLSRTQTYALLKQQLQVAAKSEDYKEAARIRDSLKLFEDEEPVLRLRRLLKEAVAEERFQDAANYRDELKKIAPHSLLKCFSDATTLGIRVQVRSVYIEGRSHPSRGLYFFAYRIRITNNSDHPAQLLRRHWIITDANGRTENVWGIGVVGEQPLILPGNSFEYSSACPLSTPNGRMEGDFEMIHVDRVGSRSFNVAIAPFSLSLLGDDDGSII 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1386 262 SUPERFAMILY ApaG-like 133 252 IPR036767 -
Ssu6g1386 262 Pfam ApaG domain 149 232 IPR007474 -
Ssu6g1386 262 ProSiteProfiles UVR domain profile. 88 123 IPR001943 GO:0005515
Ssu6g1386 262 Hamap Protein ApaG [apaG]. 130 262 IPR023065 -
Ssu6g1386 262 Pfam UvrB/uvrC motif 93 120 IPR001943 GO:0005515
Ssu6g1386 262 Pfam UvrB/uvrC motif 59 86 IPR001943 GO:0005515
Ssu6g1386 262 ProSiteProfiles ApaG domain profile. 131 258 IPR007474 -
Ssu6g1386 262 PANTHER OS05G0170800 PROTEIN 36 258 - -
Ssu6g1386 262 Gene3D ApaG domain 127 256 IPR036767 -
Ssu6g1386 262 ProSiteProfiles UVR domain profile. 53 88 IPR001943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1386 Ssu-Chr6 22798946 22803469 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1386 - K06195 gmx:100782176 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1386 6 22798946 22803469 Ssu6g1386 6 22798946 22803469 ECH
Ssu6g1386 6 22798946 22803469 Ssu1g2238 1 63549127 63552908 PCT