Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2238 ATGCAGTCGTTGAGCGTGAAGACTCGCGTGGGTTTGCGGTTACCGGTTTTAGCGGACTCGGAGACGAGGACGCAACGGGTGAATTGTCCGAACCGTAGGAATTGGAGCAGCGCGATCGTATCGTGCGGTTCGGAGAGGAACGGGAACGAGGGAATGAGTTCAAACTCGGGGTCGTATTTCTCACCGAGCCACAACTACGCGATCTTGAAGCACCGGATGGAGATGGCTGCCAAGTCCGAGTATTACGAAGAGGCCGCGAAGATTCGTGACTCGCTGAAATGCTTCGAAGACGAGGTGCCCGTTCTGCGTCTGCGGAGGTCGTTGAAGGAAGCGGTTGCTGATGAAAGGTTTCAGGACGCAGCTAGATATCGTGATGAGCTAAAAGCAATTGCCCCACATTCCCTCTTAAAATGTTCAAGTGACGCTACAACCTTGGGAATTCGGGTCCAAGTTAGGAGTGTATATATAGAGGGCAGAAGTCAGCCTTCAGAGGATCTATATTTCTTTGAATATAGAATCAGAATTACCAATAACACAAACCGCCCTGTTCAACTTCTCAGAAGGCATTGGATTATAACTGATGCTAATGGGAAAGCTGAAAATTTCTGGGGAATTGGAGTTGTTGGTGAACAGCCAGCTATCTTTCCTAAGAGTAGTTTTGAATTCTCTTCTACATGCCCATTAAGCACACAAAATGGTAGAATgGAAGGTGATTTTGAGATGATACATGTTGATCGAGAAGGCCCGAGAGCATTTAATGTGGCTGTTgcccctttctctctctccctactTGGAGATGATGATGGTGAAACTATTTGA 819 0.4579 MQSLSVKTRVGLRLPVLADSETRTQRVNCPNRRNWSSAIVSCGSERNGNEGMSSNSGSYFSPSHNYAILKHRMEMAAKSEYYEEAAKIRDSLKCFEDEVPVLRLRRSLKEAVADERFQDAARYRDELKAIAPHSLLKCSSDATTLGIRVQVRSVYIEGRSQPSEDLYFFEYRIRITNNTNRPVQLLRRHWIITDANGKAENFWGIGVVGEQPAIFPKSSFEFSSTCPLSTQNGRMEGDFEMIHVDREGPRAFNVAVAPFSLSLLGDDDGETI 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2238 272 SUPERFAMILY ApaG-like 143 262 IPR036767 -
Ssu1g2238 272 PANTHER OS05G0170800 PROTEIN 25 268 - -
Ssu1g2238 272 Pfam ApaG domain 159 242 IPR007474 -
Ssu1g2238 272 Gene3D ApaG domain 137 267 IPR036767 -
Ssu1g2238 272 ProSiteProfiles UVR domain profile. 63 98 IPR001943 GO:0005515
Ssu1g2238 272 ProSiteProfiles UVR domain profile. 98 133 IPR001943 GO:0005515
Ssu1g2238 272 Pfam UvrB/uvrC motif 103 130 IPR001943 GO:0005515
Ssu1g2238 272 ProSiteProfiles ApaG domain profile. 141 268 IPR007474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2238 Ssu-Chr1 63549127 63552908 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2238 - K06195 gmx:100799029 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2238 1 63549127 63552908 Ssu1g2238 1 63549127 63552908 ECH
Ssu6g1386 6 22798946 22803469 Ssu1g2238 1 63549127 63552908 PCT