Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1379 ATGCTGAGAGTGGGCGCAAAGAGGGTTTTGGAAACGGCGTCGTTGGGCGTTAGGGTTTCGGCGCGGTTGTACCACGAGAGGGTTGTGGATCACTACGACAACCCCCGGAACGTTGGGTCGTTCGACAAGAACGACCCGAGCGTGGGGACGGGTTTGGTGGGGGCGCCGGCGTGCGGCGATGTGATGAAGCTCCAGATTAAGGTCGACGACAAAACCGGGAAAATCGTCGATGCACGCTTCAAGACTTTCGGGTGTGGCTCCGCCATTGCGTCTTCCTCCGTCGCTACTGAGTGGGTGAAGGGAAAGCAAATGGAGGAAGttctttctataaaaaatacTGAAATTGCCAAGCATCTTTCACTTCCGCCAGTTAAGCTCCACTGCAGCATGCTTGCTGAAGATGCCATTAAAGCTGCCGTTAAAGACTATGAAGCTAAGCGTGCTAAGGAAGCTGCTAGTGCAGAGGCAACAACAGCAGATATGTCTGCCACTGCATGA 498 0.5281 MLRVGAKRVLETASLGVRVSARLYHERVVDHYDNPRNVGSFDKNDPSVGTGLVGAPACGDVMKLQIKVDDKTGKIVDARFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKEAASAEATTADMSATA 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1379 165 CDD IscU_like 23 139 IPR002871 GO:0005506|GO:0016226|GO:0051536
Ssu6g1379 165 Pfam NifU-like N terminal domain 24 149 IPR002871 GO:0005506|GO:0016226|GO:0051536
Ssu6g1379 165 Gene3D - 23 164 - -
Ssu6g1379 165 TIGRFAM iscU: FeS cluster assembly scaffold IscU 24 147 IPR011339 GO:0005506|GO:0016226|GO:0051536
Ssu6g1379 165 PANTHER IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG 13 160 IPR002871 GO:0005506|GO:0016226|GO:0051536
Ssu6g1379 165 SUPERFAMILY SufE/NifU 23 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1379 Ssu-Chr6 22693886 22695562 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1379 K22068 - gmx:100526856 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1379 6 22693886 22695562 Ssu1g2234 1 63433820 63435285 PCT