Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2234 atgctGAGAATCGCCGCAAACGCAAAGAGGCTCGTGCGAACGGCGTCGTTGGAGGCGCCAGTACCGTCGGGGATTAGGGTTCTGCCGCGACTCTACCACGAGAGGGTGGTTGACCACTACAACAACCCCCGCAATGTCGGATCCTTCGACAAGAACGACCCGACCGTGGGAACGGGTCTCGTCGGAGCACCCGCGTGTGGCGACGTCATGAAACTCCAAATTAAGGTTGACGATAAAACCGGAAAGATCGTCGATGCTCGCTTCAAAACCTTCGGCTGTGGATCCGCCATTGCTTCTTCCTCCGTCgCTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAGGTTTTGTCCATTAAAAACACTGAAATTGCAAAGCATCTTTCACTTCCACCAGTCAAGCTTCACTGCAGCATGCTTGCTGAGGATGCTATAAAAGCAGCTGTTAAAGATTATGAAGCTAAGCGTGCCTCAGCGACTGCTGGTGGACAGGCAACAACTGGAGAGAAGGCTGCCACTGCTtga 522 0.523 MLRIAANAKRLVRTASLEAPVPSGIRVLPRLYHERVVDHYNNPRNVGSFDKNDPTVGTGLVGAPACGDVMKLQIKVDDKTGKIVDARFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRASATAGGQATTGEKAATA 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2234 173 Pfam NifU-like N terminal domain 32 156 IPR002871 GO:0005506|GO:0016226|GO:0051536
Ssu1g2234 173 PANTHER IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG 7 169 IPR002871 GO:0005506|GO:0016226|GO:0051536
Ssu1g2234 173 SUPERFAMILY SufE/NifU 31 155 - -
Ssu1g2234 173 TIGRFAM iscU: FeS cluster assembly scaffold IscU 32 155 IPR011339 GO:0005506|GO:0016226|GO:0051536
Ssu1g2234 173 Gene3D - 31 172 - -
Ssu1g2234 173 CDD IscU_like 31 147 IPR002871 GO:0005506|GO:0016226|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2234 Ssu-Chr1 63433820 63435285 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2234 K22068 - gmx:100806169 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1379 6 22693886 22695562 Ssu1g2234 1 63433820 63435285 PCT