Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1376 ATGGCTCACACAGGCAGCAATTCAATGCACAGGTCGAGTTCACGGCCTCAGCTGGATCTCAGCAAAGCAGAGATTCAAGGAAACGTCGAAGAGAAATATCCAACTATTTTGTTACCCAATCAATCTCATGATATATCTCACCTCGCTCTTGACATTGGAGGATCTCTTATAAAGTTGATGTACTTTTCAAGACACGAAGATCAATCAACCAGTGATAAAAGGATGAGAAATGCGAAGGATCAACTGGGATTTCCCAATGGTAACAGGAGAAGCTATCCTATTCTTGGGGGAAGGCTTCATTTTGTGAAGTTTGAGACTAGCAAGATTAACGAGTGCTTAGACTTCATTTATTCAAAGCAGCTTCACTGTGGTGGTATTACTGCTACTGGTGGTGGAGCACACAAATTTGCTGACCTTTTCAAAGAAAGACTCGGACTTAGTCTTGACAAAGAAGATGAAATGAGCTGTCTCGTAGCAGGAGCAAATTTCTTGCTTAAGGCAATTCGTCATGAAGCTTTTACACACATGGAGGGCCAGAAAGAGTTTGTTCAAATTGACCCTaatgatttgtttccttatcTTCTAGTTAATATTGGATCTGGTGTTAGTATGATCAAGGTTGATGGGGATGGAAAATTTGAGAGGGTCAGTGGGACTAATGTTGGTGGTGGTACTTATTGGGGCTTGGGAAGGCTGTTAACAAAGTGTGAGAGTTTTGATGAGTTACTTGAGCTGAGTCAGAAAGGAGATAATAGAAACACTGACATGCTTGTTGGGGACATTTATGGTGGCATGGACTATTCTAAGATTGGCCTATCGGCTTCTACCATTGCTTCAAGTTTTGGCAAGGCTACGTCAGAAAAAAAGGAGCTTGAAGACTACAGACCTGAAGATATATCACTCTCTCTTCTGCGAATGATTTCATACAATATTGCCCAGATATCCTACTTGAATGCATTGCGATTTGGGTTGAAGCGTATCTTTTTTGGAGGATTTTTTATAAGGGGTCATGCCTATACCATGGATGCTATTTCTTTTGCAAATCATTTCTGGTCTAATGGGGCTGCACAAGCAATGTTCTTGCGACATGAAGGATTTCTGGGAGCATTAGGTGCATTTATGAGCTATGAAAAGCACGGTTTAGATGACCTCATGGTGCATCAGTTAGTTGAAAGATTCCCAATGGGTGCTCCATATACAGGAGGCAAGATTCATGGCCCCCCACTTAGGGATTTGAATGAGAAGGCAATGCAGATTTCGTGGATGGAGAAGTTTCTGCAGAAGGGAACTGAGATCACTGCCCCTGTGCCGATGGCTCCTCCTGGAACTACTGGACTTGGGGGTTTTGAAGTTCCTTTGTCAAAAGGAAGTGCTCTGCGATCTGATGCTAGTGCTCTAAATGTTGGGGTCCTCCATCTAGTACCCACTTTGGAGGTGTTTCCATTATTAGCAGACCTGAAAACgTATGAGCCTAATACTATTGATCTCTCAGATCACAGTGAATTAGAGTATTGGTTCAAGATTTTGTCAGAGCACTTGCCAGATCTTGTGGACAAGGCTGTAGCAAGTGAAGGTGGGACGGATGATGCCAAAAGAAGGGGTGATGCTTTTGCTCGTGCATTTTCTGCCCACCTGGCTAGGTTAATGGAGGAGCCTGCTGCATACGGGAAGTTAGGCCTGGCCAAACTACTGGAAATGAGGGAAGAGTGCTTGAGGGAATTCCATTTTTTTGATGCTTATATAAGTATAAAGCAGAGGGAAAATGAGGCATCACTTGCTGTCTTACCTGATTTGTTGATGGAGCTTGATAGTTTGGATGAGGAGACAAGACTACTTACTCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGATTGGGGATCTCGTGCATGTGTGGATCTCTATCATAAAGGAActattattgaaatttacagAATGAGTCGCAATAAAATGCAGAGACCTTGGCGAGTGGATGATTTTGATGCCTTTAAAGAGAGAATGTTAGGAACTGGGGACAAGAAACCATCTCCACATAGAAGAGCTTTACTTTTTGTGGACAATTCAGGTGCTGACATTGTTCTAGGGATGCTTCCCCTGGCACGAGAGCTCCTCCGTCGTGGAACTGAAGTGGTCCTGGTTGCGAACTCCCTTCCTGCTTTGAATGATGTGACTGCAATGGAGCTTCCTGACATTGTTGCTGAGGCTGCCAAGCACTGTGACATTCTTAGGCGAGCTGCTGAATCTGGAGGCTTGCTTGTGGATGCAATGACTAATACCTCGGACAATTCTAAAGAAAATTCGTCTTCTGTTCCTTTGATGGTTGTTGAGAATGGGTGTGGTAGTCCATGTATAGACTTGAGACAGGTCAGCTCTGAGCTGGCTACTGCTGCAAAAGATGCTGATTTGATAATTTTAGAAGGGATGGGTAGAGCTCTTCATACCAACCTCTATGCCCGGTTTCAGTGTGATGCTTTGAAGCTTGCAATGGTGAAAAACCAGAGATTGGCTGAAAAGTTGATTAAAGGAAACATATACGACTGTATTTGCAAGTACGAGCCTGCTAACTGA 2568 0.4283 MAHTGSNSMHRSSSRPQLDLSKAEIQGNVEEKYPTILLPNQSHDISHLALDIGGSLIKLMYFSRHEDQSTSDKRMRNAKDQLGFPNGNRRSYPILGGRLHFVKFETSKINECLDFIYSKQLHCGGITATGGGAHKFADLFKERLGLSLDKEDEMSCLVAGANFLLKAIRHEAFTHMEGQKEFVQIDPNDLFPYLLVNIGSGVSMIKVDGDGKFERVSGTNVGGGTYWGLGRLLTKCESFDELLELSQKGDNRNTDMLVGDIYGGMDYSKIGLSASTIASSFGKATSEKKELEDYRPEDISLSLLRMISYNIAQISYLNALRFGLKRIFFGGFFIRGHAYTMDAISFANHFWSNGAAQAMFLRHEGFLGALGAFMSYEKHGLDDLMVHQLVERFPMGAPYTGGKIHGPPLRDLNEKAMQISWMEKFLQKGTEITAPVPMAPPGTTGLGGFEVPLSKGSALRSDASALNVGVLHLVPTLEVFPLLADLKTYEPNTIDLSDHSELEYWFKILSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSAHLARLMEEPAAYGKLGLAKLLEMREECLREFHFFDAYISIKQRENEASLAVLPDLLMELDSLDEETRLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGTGDKKPSPHRRALLFVDNSGADIVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAESGGLLVDAMTNTSDNSKENSSSVPLMVVENGCGSPCIDLRQVSSELATAAKDADLIILEGMGRALHTNLYARFQCDALKLAMVKNQRLAEKLIKGNIYDCICKYEPAN 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1376 855 Gene3D - 40 184 - -
Ssu6g1376 855 Gene3D - 253 365 - -
Ssu6g1376 855 Gene3D - 492 576 IPR035073 -
Ssu6g1376 855 SUPERFAMILY Actin-like ATPase domain 45 171 IPR043129 -
Ssu6g1376 855 PANTHER PANTOTHENATE KINASE 6 775 IPR004567 GO:0004594|GO:0005524|GO:0015937
Ssu6g1376 855 PIRSF PanK_long 1 855 IPR015844 GO:0004594|GO:0015937
Ssu6g1376 855 TIGRFAM panK_eukar: pantothenate kinase 47 375 IPR004567 GO:0004594|GO:0005524|GO:0015937
Ssu6g1376 855 Pfam Fumble 47 374 IPR004567 GO:0004594|GO:0005524|GO:0015937
Ssu6g1376 855 SUPERFAMILY Actin-like ATPase domain 143 376 IPR043129 -
Ssu6g1376 855 PANTHER PANTOTHENATE KINASE 2 6 775 - -
Ssu6g1376 855 SUPERFAMILY AF1104-like 470 853 IPR036075 -
Ssu6g1376 855 Pfam Damage-control phosphatase ARMT1-like domain 562 841 IPR002791 -
Ssu6g1376 855 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 656 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1376 Ssu-Chr6 22651796 22664310 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1376 K24265 K09680 gmx:100783082 1582.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2233 1 63410150 63429888 Ssu6g1376 6 22651796 22664310 ECH
Ssu6g1376 6 22651796 22664310 Ssu6g1376 6 22651796 22664310 ECH
Ssu6g1376 6 22651796 22664310 Ssu1g2233 1 63410150 63429888 PCT