Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1374 ATGGAGCGACCAATTCACGATTCGTTAGAGAAACAGCCTCATGTTTCCACCGCCGGCGAGGAAGAATCGGTCGTGTCCGATTGCGAGAGCGGGGTTTCCGGCGGCGAGACGGCGTTCGACGGAGGGTTTGTTCCGGCGTACGAAAACGGCGACCTCATCATGAGCAGATTCGTTCGGGGCTTGGGCGCGCACGGGTTGAAACCCGAGGTAGTGGCGATTGGCAGGAATGCGTGTTCCTCCGTGATGGCGCAAGCGCGTGTTCAGTCCTTTCAGGTGTTCGCGCGTGCGGTGGCCAAATTGCGCGACGGCAGTGCCAACGTGAGGTTCGCTTGGTACGGTGCGTCCGGTAAGGAAGAGATAGCCGACATCGTCCAACACGGTTTCGGCCACGCTCACACTAACGGCCTGCATCTCTCTCCACAAGATTCTCCACTTGAAAGTGTGAAGAGCTCCGTTGTCGACAAAGACGGTTTGAGGCACTTGTTGCTGTGTCGCGTTATCTTGGGGAAGACGGAGGTGGTGCCACGTGGCTCCAATCAATGCCGTTGGAGTTCTGAAGAGTATGATTCTGGGGTGGACGATCTTTCGGATCCCAAGGAGTATGTTATTTGGTGTAATCGGATCAACACTCATGTTTTGCCCGAATATGTTTTGAGTTTCAGGCTTCCTTCCTTGAAAGGGCATGTGAAGATTGGGGAACCGTTGAGGCCTTCTTCGCCTTGGATGCCATTTCCAACTCTGATTTCAGTGCTTTCGAAGATTTTGCCTCCGCCTGACATTGCCTTCATTGCCAAGTTTCACAAAGAGTATAGGGAAAAGAGGATTTCTCGACATGAGCTGATACAGAAAGTGAGAGTAATAGCAGGCGACAAATTGCTACTTTCCGTCATCAAATCTTTTAGAGCCAAGAAAATACCTGCAAGCTTCAAAGCAAACAAGGTGAAAGAATGGCAACCAGACAGCCAGCAGCGTGAACGGAATGATTGTTCATATGAGCTCTATTAG 1005 0.5154 MERPIHDSLEKQPHVSTAGEEESVVSDCESGVSGGETAFDGGFVPAYENGDLIMSRFVRGLGAHGLKPEVVAIGRNACSSVMAQARVQSFQVFARAVAKLRDGSANVRFAWYGASGKEEIADIVQHGFGHAHTNGLHLSPQDSPLESVKSSVVDKDGLRHLLLCRVILGKTEVVPRGSNQCRWSSEEYDSGVDDLSDPKEYVIWCNRINTHVLPEYVLSFRLPSLKGHVKIGEPLRPSSPWMPFPTLISVLSKILPPPDIAFIAKFHKEYREKRISRHELIQKVRVIAGDKLLLSVIKSFRAKKIPASFKANKVKEWQPDSQQRERNDCSYELY 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1374 334 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4 14 310 - -
Ssu6g1374 334 SUPERFAMILY ADP-ribosylation 82 221 - -
Ssu6g1374 334 Pfam RCD1-SRO-TAF4 (RST) plant domain 236 301 IPR022003 -
Ssu6g1374 334 MobiDBLite consensus disorder prediction 1 32 - -
Ssu6g1374 334 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 14 310 IPR044964 -
Ssu6g1374 334 ProSiteProfiles PARP catalytic domain profile. 1 238 IPR012317 GO:0003950
Ssu6g1374 334 MobiDBLite consensus disorder prediction 1 17 - -
Ssu6g1374 334 Gene3D - 47 221 - -
Ssu6g1374 334 ProSiteProfiles RST domain profile. 235 306 IPR022003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1374 Ssu-Chr6 22615262 22618512 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1374 - - gmx:100784311 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1374 6 22615262 22618512 Ssu1g2230 1 63250821 63253613 PCT