Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2230 ATGGAACCAACATTCCCTCAACAAGACGAAGACTCCGTTGTTTCTGATTGCGAGAGCGGTGTTTCGGGCAGCAGCGGAGCCGTGCCTCGACAGCAACACAGTCTTCTCCTCGTTCGGCTCGGAGAAGGTGACGCCGTTCACGACCTCATCAAGAGAAGGTTCATTCGTGGACTGGGCCTGCTCGGGCCCAAAACCGAGGTCGTCTCCGTTCTCCGAAACGCGTGTTCCAGCGTCGTTTCGCAGGCGCGGCTTCAGTCCTTTCAGGTTTACGCTAAGGCGGTGGCGAAGCTCCGCGACGGGAATGCCAACGTGAAGTACGCGTGGTACGGAACTCGCGGCGAGAGGGACATAAACGACATCGTTTCGCACGGGTTCGGTCACGCGCACGGTCGCGAACTGGTTCTCTCCCCCGATGACGCTCCTCTGGAGAGcGTGAAAGGGTGTGCGGTCGGGAAAGACGGTGTGAGGCACGCGCTACTGTGCCGCGTTATTCTGGGGAGATCGGAGATTGTTCACGCTGGCACAGAGCAATGTTATCCGAGTTGCGAGGAGTATGATTCTGGGGTGGATAGTTTTTCGGGTCCTAGCAAGTACATAATTTGGAGTAACCGCATGAACACGCATGTTTTGCCTGCTTATGTTATAAGCTTCAGAGTTTCTTCTTCCTTGAAAGgGATTGAGAAGAGTGAAGAAGAAACTTTGAGACCATCTTCTCCTTGGATGCCACTCCCAACTCTGATTTCTGTGCTTTCAAAGGTTTTGCCTCCATGTGATATTGCCCTCATCTCCAAGTTCTACAAAGATAAAAAGGAGAAGAAGATTTCGCGACATGAATTGATACAAAGAGTGAGACGAATAGCAGGAGACAAGTTGCTGGTTGCAGTCATCAAATCATACAGAGACAAGAAAAGACCAAGCTTTGTGCAAACAAGGCAAAGAATGGCTTAG 948 0.5137 MEPTFPQQDEDSVVSDCESGVSGSSGAVPRQQHSLLLVRLGEGDAVHDLIKRRFIRGLGLLGPKTEVVSVLRNACSSVVSQARLQSFQVYAKAVAKLRDGNANVKYAWYGTRGERDINDIVSHGFGHAHGRELVLSPDDAPLESVKGCAVGKDGVRHALLCRVILGRSEIVHAGTEQCYPSCEEYDSGVDSFSGPSKYIIWSNRMNTHVLPAYVISFRVSSSLKGIEKSEEETLRPSSPWMPLPTLISVLSKVLPPCDIALISKFYKDKKEKKISRHELIQRVRRIAGDKLLVAVIKSYRDKKRPSFVQTRQRMA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2230 315 ProSiteProfiles PARP catalytic domain profile. 24 238 IPR012317 GO:0003950
Ssu1g2230 315 MobiDBLite consensus disorder prediction 1 27 - -
Ssu1g2230 315 ProSiteProfiles RST domain profile. 234 305 IPR022003 -
Ssu1g2230 315 Gene3D - 35 219 - -
Ssu1g2230 315 SUPERFAMILY ADP-ribosylation 37 218 - -
Ssu1g2230 315 MobiDBLite consensus disorder prediction 8 27 - -
Ssu1g2230 315 Pfam RCD1-SRO-TAF4 (RST) plant domain 235 300 IPR022003 -
Ssu1g2230 315 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 6 307 IPR044964 -
Ssu1g2230 315 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4 6 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2230 Ssu-Chr1 63250821 63253613 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2230 - - gmx:100791977 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1374 6 22615262 22618512 Ssu1g2230 1 63250821 63253613 PCT