Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1368 ATGCCAGGGATTGCTACAGATGGAGTTAATGATGGAAGGGAAGTAAATGAAATGAATGGGATTGGGAACACTTCACCCTTAAAGGAAACCTCAACTCCAATCAAGTACCTTAGGAGTTCCTTGAGTCCACAAAGATGCCAAAGTTCTGTTGATGGGGTGGTTGGCACTTCCTCAATTGATCGGctttatgaaaatgttagtgACGTGCAAAGTTCTGCTCAATCATCCTCAAGACAAAGTTTTGGATCCGATGGTGCTGAGTCTAGAACTGATTCAGAATTGCACCATCTAATTGGAGGAGAAATGAGGGAGGTGGAGATAGTGAAAGAGGAAACGGAGAAAAAGACACAAGGGGATTCTAGTAGCGTAACATCTTCCACAATGAGTAGTTCGTCCAATGATAAGAAGTTGGATAAGGTGGACGAGATTCAGTCACCAACTGCAAGTTGTGTTGTTTCAcaaaaaccaaacaaagcatcACAATCACAGTTGGCCCCTGAAACTCCATCAAAATCAAGACCAATGGGAAAAAGCCCTCCTGCAAAACCTCCTGTTGATAGGAAGAATGATAATCCtttgagaaaacaaagtacaggAGTTACCCGCGTGAAAAAATCTGTTGGTGGAAGATCACCGTCACAAAGTCAAATTGGGAATTCCACTGAATCAGCATTGGATAAGCCTGAACTGGGACCAACTTTGCTAAACCAAGCAAGGGACATGATTCAATCAGGAGATAATCCGAAGAAAGCTCTTGAATTATCTCTTCAAGCAATGAAATTCTTTGAGAGGGCTGCTTATGGGAAACCAAGTTTGGATTTGGTCATGTGTTTACATGTCACTGCAGAAATATATTGCACTTTGGGCCGTTTCAATGAAGCAATTCCAATTATAGAGCGCTCAATTGAGATTCCTGTTACTGAGGAAGGCCAAAAACATGCCATTGCTAAATTTGCCGGTCACATGCAACTAGGAGACATATACGCTATGCTGGGCCAGCTTGAGAATTCAATTAAGTGCTACACTGCGGGGTTGGAAGTACAAAGGCAGGTTATGGGAGAAACAGACCCAAGAGTTGGTGAAACTTGTAGGTATGTGGCTGAGGCTAACTTTCAAGCATTGCAATTTGATGAGGCAGAGAGGCTGTGCCAAATTGCCCTTGACATTCATACAGCAAATGGTTCACCCTCATCTCTTGAAGAGGCAGCTGATAGGAGGCTAATGGGCCTTATATGTGAAGCAAATGAGAATCATGAAGCAGCCCTGGAGCATCTTGTTTTGGCCAGCATGGCAATGGTGGCAAATGGCCAAGAAGTGGAAGTGGCATCTGTTGACTGCAGCATTGGAGACACATACTTATCCTTGGCTAGATATGATGAGGCCATATTTGCATATCAGAGAGCTTTGACTGTTTTCAAGACCCATAAAGGTGAGAATCATCCTGCTGTGGGATCAGTCTTTGTGCGTCTGGCTGACTTGTATTGCAGGACATGGAAGATAAGGGAATCAAAATCATATTGTGAGAATGCACTTAGAATCTATGAGAATCCTATGTCTGGGGTCCCTCCGGAGGATATTGCTAATGGTCTTATGAATGTCTCAGCCATTTATGAGTCAATGAATGAGCTAGAACAGGCACTTAAGTTACTGCACAAGGCACTAGAGATACATAATGATGCCCCTGGTCAGCAAAGTACAATAGCAGGAATTGAAGCTCAGATGGGGGTCATGTGCTACATGTTGGAGAACTATACCGAGTCTTACAATGCTTTCAAGAATGCCGTGTCGAAGCTTCGTGCTATTGGAGAGAAGAAATCAGCCTTCTTTGGTACTGTTCTTAACCAAATGGGACTTGCTTGTGTACAGCGCCATGCCTTAAGTGAGGCTGCAGAATTGTTTGAAGAAGCGAGGGTCGTTTTAGAACAAGAGAATGGACCATATCACCCTGAAACACTTGGAGTGTATGGCAATCTTGCTGGCACGTATGATGCAATTGGCAGGCTGGATGAGGCCATTGAAATTCTGGAACACATTGTCGTTATGAGGGAGGAAAAGCTTGGGACAGCAAATCCTGATGTTGCTGATGAGAAGAGAAGGTTGGACGAGTTGTTGAAGGAAACAGGCAGAATTCGGAACAGAAAAGCCAAGTCACTTGAGAACCTTCTTGATACCAATGGTCGCACTATAAACCACTTTGTCATCGAGGCCTGA 2211 0.4283 MPGIATDGVNDGREVNEMNGIGNTSPLKETSTPIKYLRSSLSPQRCQSSVDGVVGTSSIDRLYENVSDVQSSAQSSSRQSFGSDGAESRTDSELHHLIGGEMREVEIVKEETEKKTQGDSSSVTSSTMSSSSNDKKLDKVDEIQSPTASCVVSQKPNKASQSQLAPETPSKSRPMGKSPPAKPPVDRKNDNPLRKQSTGVTRVKKSVGGRSPSQSQIGNSTESALDKPELGPTLLNQARDMIQSGDNPKKALELSLQAMKFFERAAYGKPSLDLVMCLHVTAEIYCTLGRFNEAIPIIERSIEIPVTEEGQKHAIAKFAGHMQLGDIYAMLGQLENSIKCYTAGLEVQRQVMGETDPRVGETCRYVAEANFQALQFDEAERLCQIALDIHTANGSPSSLEEAADRRLMGLICEANENHEAALEHLVLASMAMVANGQEVEVASVDCSIGDTYLSLARYDEAIFAYQRALTVFKTHKGENHPAVGSVFVRLADLYCRTWKIRESKSYCENALRIYENPMSGVPPEDIANGLMNVSAIYESMNELEQALKLLHKALEIHNDAPGQQSTIAGIEAQMGVMCYMLENYTESYNAFKNAVSKLRAIGEKKSAFFGTVLNQMGLACVQRHALSEAAELFEEARVVLEQENGPYHPETLGVYGNLAGTYDAIGRLDEAIEILEHIVVMREEKLGTANPDVADEKRRLDELLKETGRIRNRKAKSLENLLDTNGRTINHFVIEA 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1368 736 ProSiteProfiles TPR repeat profile. 527 560 IPR019734 GO:0005515
Ssu6g1368 736 MobiDBLite consensus disorder prediction 1 30 - -
Ssu6g1368 736 MobiDBLite consensus disorder prediction 194 223 - -
Ssu6g1368 736 Gene3D Tetratricopeptide repeat domain 226 320 IPR011990 GO:0005515
Ssu6g1368 736 MobiDBLite consensus disorder prediction 65 229 - -
Ssu6g1368 736 Coils Coil 540 560 - -
Ssu6g1368 736 MobiDBLite consensus disorder prediction 118 133 - -
Ssu6g1368 736 ProSiteProfiles TPR repeat profile. 442 475 IPR019734 GO:0005515
Ssu6g1368 736 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 21 725 - -
Ssu6g1368 736 Pfam Tetratricopeptide repeat 322 349 IPR019734 GO:0005515
Ssu6g1368 736 MobiDBLite consensus disorder prediction 88 117 - -
Ssu6g1368 736 SUPERFAMILY TPR-like 282 560 IPR011990 GO:0005515
Ssu6g1368 736 MobiDBLite consensus disorder prediction 146 169 - -
Ssu6g1368 736 MobiDBLite consensus disorder prediction 65 87 - -
Ssu6g1368 736 PANTHER KINESIN LIGHT CHAIN 21 725 - -
Ssu6g1368 736 SUPERFAMILY TPR-like 567 710 IPR011990 GO:0005515
Ssu6g1368 736 Pfam MalT-like TPR region 375 559 IPR041617 -
Ssu6g1368 736 Gene3D Tetratricopeptide repeat domain 321 429 IPR011990 GO:0005515
Ssu6g1368 736 Gene3D Tetratricopeptide repeat domain 604 720 IPR011990 GO:0005515
Ssu6g1368 736 Gene3D Tetratricopeptide repeat domain 430 603 IPR011990 GO:0005515
Ssu6g1368 736 Pfam Tetratricopeptide repeat 611 678 - -
Ssu6g1368 736 SMART tpr_5 275 308 IPR019734 GO:0005515
Ssu6g1368 736 SMART tpr_5 610 643 IPR019734 GO:0005515
Ssu6g1368 736 SMART tpr_5 442 475 IPR019734 GO:0005515
Ssu6g1368 736 SMART tpr_5 360 393 IPR019734 GO:0005515
Ssu6g1368 736 SMART tpr_5 318 351 IPR019734 GO:0005515
Ssu6g1368 736 SMART tpr_5 484 517 IPR019734 GO:0005515
Ssu6g1368 736 SMART tpr_5 527 560 IPR019734 GO:0005515
Ssu6g1368 736 SMART tpr_5 568 601 IPR019734 GO:0005515
Ssu6g1368 736 SMART tpr_5 652 685 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1368 Ssu-Chr6 22396249 22399000 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1368 - - gmx:100813461 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2225 1 63104117 63106233 Ssu6g1368 6 22396249 22399000 ECH
Ssu6g1368 6 22396249 22399000 Ssu6g1368 6 22396249 22399000 ECH
Ssu6g1368 6 22396249 22399000 Ssu1g2225 1 63104117 63106233 PCT