Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2225 ATGGGAAACCAAGTTTGGAGCTGGTTATGTGTTTACATGTTACAGCAGCAATATATTGCAGCTTGGGTCAATACGGTGAGGCAATTCCGATTCTTGAGCAGGTCAATTGCGATTCCTGTTATTGGGGAAAGTCAACAACATGCCCTTGCTAAATTTGCCGGTCACATGCAACTGGGAGACACCTATGCTATGCTGGGCCAGCTTGAGAATTCAATTATGTGCTACACCACTGGATTAGAAGTCCAGAGGCTGGTTTTGGGAGAGACAGACCCAAGGGTTGGTGAAACTTGTCGGTACGTGGCTGAAGCTAATGTTCAAGCTTTGCAATTTGATGAAGCAGAGAGGCTGTGTCAAATGGCTCTTGACATTCATAAAGCAAATAATTCAGCTCCATCTCTTGAAGAGGCAGCTGATAGGAGGCTCATGGGCCTTATATGTGAGACAAAGGGAAATCATGAAGCAGCTCTTGAGCATCTTGTTTTAGCCAGCATGGCAATGGTGGCTAATGGCCAGGAAGCAGAAGTGGCGTCTGTTGACTGCAGCATTGGAGACACATACTTATCCTTGTCTCGATATGATGAGGCTGTCTTTGCATATCAGAAAGCGCTCACAGTTTTCAAGACTAGCAAAGGAGAAAATCATCCAGCAGTGGGATCAGTTTTTGTACGTTTGGCTGACTTGTATAACAGGACGGGGAAGATTAGGGAATCAAAATCATATTGTGAGAGTGCGCTTAGAATATACGAGAGTCCAATGCCTGGAGTTCCTCCAGAGGAGATAGCTAGTGGTCTTACGAATATTTCAACTATCTATGAGTCAATGAATGAGCTTGAACAGGCACTCAAGTTACTGCAGAAAGCACTGGAGATATATAATGATGCCCCTGGTCAGCAAAGCACAACAGCTGGAATTGAAGCTCAGATGGGAGTCATGTACTACATGTTGGGGAACTATTCCGAATCTTACAACACTTTGAAGAATGCTATTTCAAAGCTTCGTGCTATTGGAGAAAAGAAATCATCCTTCTTTGGTATTGCTCTTAATCAAATGGGACTTGCCTGTGTGCAGTGTTATGCCTTAACTGAGGCTACAGAATTATTTGAAGAAGCGAAGAGTATTTTGGAACATGAGTATGGACCGTATCACCCAGAAACACTTGGGGTTTATAGTAATCTTGCCGGCACGTATGATGCAATTGGCAGGCTGGATGATGCAATTCAAATTCTGGAGTACGTTGTTAGCATGAGGGAGGAAAAGCTTGGGACAGCAAATCCTGACGTGGATGATGAGAAGAGAAGATTGGATGAGTTGTTGAAGGAAGCAGGTAGAGTTAGGAGCAGAAAAGTCAGGTCACTTGAGAACCTTCTTGATGGCAATGCTCACGCTGTAAACAACGTTGTCATCAGGGCCTGA 1413 0.4416 MGNQVWSWLCVYMLQQQYIAAWVNTVRQFRFLSRSIAIPVIGESQQHALAKFAGHMQLGDTYAMLGQLENSIMCYTTGLEVQRLVLGETDPRVGETCRYVAEANVQALQFDEAERLCQMALDIHKANNSAPSLEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEAEVASVDCSIGDTYLSLSRYDEAVFAYQKALTVFKTSKGENHPAVGSVFVRLADLYNRTGKIRESKSYCESALRIYESPMPGVPPEEIASGLTNISTIYESMNELEQALKLLQKALEIYNDAPGQQSTTAGIEAQMGVMYYMLGNYSESYNTLKNAISKLRAIGEKKSSFFGIALNQMGLACVQCYALTEATELFEEAKSILEHEYGPYHPETLGVYSNLAGTYDAIGRLDDAIQILEYVVSMREEKLGTANPDVDDEKRRLDELLKEAGRVRSRKVRSLENLLDGNAHAVNNVVIRA 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2225 470 Coils Coil 427 447 - -
Ssu1g2225 470 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 30 459 - -
Ssu1g2225 470 Pfam Tetratricopeptide repeat 175 250 - -
Ssu1g2225 470 Pfam Tetratricopeptide repeat 345 417 - -
Ssu1g2225 470 Pfam Tetratricopeptide repeat 261 294 - -
Ssu1g2225 470 SUPERFAMILY TPR-like 180 415 IPR011990 GO:0005515
Ssu1g2225 470 Gene3D Tetratricopeptide repeat domain 338 441 IPR011990 GO:0005515
Ssu1g2225 470 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Ssu1g2225 470 Gene3D Tetratricopeptide repeat domain 43 162 IPR011990 GO:0005515
Ssu1g2225 470 Gene3D Tetratricopeptide repeat domain 163 337 IPR011990 GO:0005515
Ssu1g2225 470 SMART tpr_5 94 127 IPR019734 GO:0005515
Ssu1g2225 470 SMART tpr_5 261 294 IPR019734 GO:0005515
Ssu1g2225 470 SMART tpr_5 386 419 IPR019734 GO:0005515
Ssu1g2225 470 SMART tpr_5 302 335 IPR019734 GO:0005515
Ssu1g2225 470 SMART tpr_5 52 85 IPR019734 GO:0005515
Ssu1g2225 470 SMART tpr_5 344 377 IPR019734 GO:0005515
Ssu1g2225 470 SMART tpr_5 176 209 IPR019734 GO:0005515
Ssu1g2225 470 SMART tpr_5 218 251 IPR019734 GO:0005515
Ssu1g2225 470 Coils Coil 267 294 - -
Ssu1g2225 470 PANTHER KINESIN LIGHT CHAIN 30 459 - -
Ssu1g2225 470 ProSiteProfiles TPR repeat profile. 261 294 IPR019734 GO:0005515
Ssu1g2225 470 SUPERFAMILY TPR-like 55 157 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2225 Ssu-Chr1 63104117 63106233 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2225 - - gmx:100791625 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2225 1 63104117 63106233 Ssu6g1368 6 22396249 22399000 ECH
Ssu1g2225 1 63104117 63106233 Ssu1g2225 1 63104117 63106233 ECH
Ssu6g1368 6 22396249 22399000 Ssu1g2225 1 63104117 63106233 PCT