Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1366 ATGAAGACCTCGTCGTCGAGGAACTCCGAGTCCTCGAGTCAGTTCGACTCGCCTCACTCACCTCTCCGATACCGATCTTCCCCGCTCTCCGACGGCGGAGACCCCTTCCACTCGCCGGAAAACTCGCCGGAAAATGACCCCAGAGACAATTCCAGGGCCATCGTTATCGTCGAGACCTCCGCGCAATTCGCCCAGGTCGCGCCCCCCGCGCCCGAATCCGAGCACCAGAACCCGCCGCCCAATGAGTTGCCGGAGGTGGTGGTTAGCCTGGCCATGAGGCCCGAGCAGAGGTCGCCGACGACCGTACTCGGCGGTCGGGGGAGACCGAGGGAGCCGCCGCGGGGAGCCGGTGATCGGGGGAGACCGAGGCCGCCCAGTCCGGTGATTCCGAAAGGAGAGGTGATGGCGAAAAAGGTGGCCTTAGGGTTCCGGTTAAGCGAGGTGGTGCTGTGTCTGATTTCGTTTTCGGTTATGGCTGCGGATAAGACTCGTGGTTGGAGCGGTGACTCTTTTGATCGCTACAAGGAATACAgGTATTGTTTGTCGGTGAATGTTATCGCATTTGTATACGCAGTGTTTCAAGCGGGTGATCTGGCTTATCAAATAGTCACGGGGAGACGCATAATCAACCACCACCTGCGTTACCACTTTGATTTCTTTATGGATCAGGCAAGTCAGAGAGGACTcGTTCTGGCGTATCTTCTGATATCGGCAGCGTCATCTGCGGCCACACGGGTTGATGACTGGCAATCAAATTGGGGAAAAGATGAATTCACTGAGATGGCTAGTGCTTCAGTTGCGTTGGCCTTCCTTGCTTTTATTGCCTTTGCTATCAGCTCGTTAATCTCTGGCTACAACCTCTGCACTCTGTTCTCATAG 879 0.5586 MKTSSSRNSESSSQFDSPHSPLRYRSSPLSDGGDPFHSPENSPENDPRDNSRAIVIVETSAQFAQVAPPAPESEHQNPPPNELPEVVVSLAMRPEQRSPTTVLGGRGRPREPPRGAGDRGRPRPPSPVIPKGEVMAKKVALGFRLSEVVLCLISFSVMAADKTRGWSGDSFDRYKEYRYCLSVNVIAFVYAVFQAGDLAYQIVTGRRIINHHLRYHFDFFMDQASQRGLVLAYLLISAASSAATRVDDWQSNWGKDEFTEMASASVALAFLAFIAFAISSLISGYNLCTLFS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1366 292 MobiDBLite consensus disorder prediction 1 24 - -
Ssu6g1366 292 MobiDBLite consensus disorder prediction 96 131 - -
Ssu6g1366 292 MobiDBLite consensus disorder prediction 1 83 - -
Ssu6g1366 292 Pfam Casparian strip membrane protein domain 136 275 IPR006702 -
Ssu6g1366 292 PANTHER CASP-LIKE PROTEIN 4A3 74 289 - -
Ssu6g1366 292 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 74 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1366 Ssu-Chr6 22341112 22342378 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1366 - - gmx:100812568 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2222 1 63025169 63027861 Ssu6g1366 6 22341112 22342378 ECH
Ssu6g1366 6 22341112 22342378 Ssu6g1366 6 22341112 22342378 ECH
Ssu6g1366 6 22341112 22342378 Ssu1g2222 1 63025169 63027861 PCT