Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2222 ATGGCAAATCACCACGACACTGCCGCCATGAACAAGTCGCTGTCGAAGAACTCCGAGTCGTCGACTCAGTTCGACTCGCCCCTCCGCTTCCACTCTCCCATGCGCTGGGACGGCACCGATCCGCCGGAGTCGCCGGAGTACCGGTCGCCGGAAAACTCGCCGGATAAGTACGTGGACAACTCCATGGCCATCGTGACCGTCGGCAAGCTCAAGCAGTACCCTCCGGACAAGCGCGCGGAGCACCGGAAGCAGCCGGAAAACGCTCCGTCGGCGGTGATGGTGTTCAACGGCTCGGCGACGGAGGAGCCTCAGCGGCCGGCGGCGAAGGCGGGTCCGGCCATCGACGGAGGCGAACGGAGATCGAGGTCGGCGGCGGGGGGGTGGAAGACGGAGGAGACGGTGAGCAAGGCGGCGCTAGGGTTCCGGCTGAGCGAGGTGGTGGTGTGTCTCATTTCGTTTTCTGTCATGGCGGCGGATAAGACGCAAGGTTGGAGTGGCGACTCCTTTGATCGCTATAGAGAATAtagGTATTGTTTATCTGTGAATGTTATTGGATTTGCATACTCAGCATTACAAGCATGTGGTCTGGCATGTCAACTAGCCACAGGGAATCACTTAATCAGTCACCACCTTCGCCGCCACTTTGATTTCTTCATGGATCAGGTTCTGGCATATCTTCTGATATCGGCATCATCATCTGCAGCCACACGAGTTGACGATTGGATATCGAATTGGGGGAAAGACGAGTTCACAGAAATGGCCACTGCTTCAGTTGGAATGGCCTTCCTCGCATTTGTTGCCTTTGCTATGAGCTCACTCATCTCTGGTTACGCCCTATGCCACAGCAGCTCCATGTGA 858 0.5676 MANHHDTAAMNKSLSKNSESSTQFDSPLRFHSPMRWDGTDPPESPEYRSPENSPDKYVDNSMAIVTVGKLKQYPPDKRAEHRKQPENAPSAVMVFNGSATEEPQRPAAKAGPAIDGGERRSRSAAGGWKTEETVSKAALGFRLSEVVVCLISFSVMAADKTQGWSGDSFDRYREYRYCLSVNVIGFAYSALQACGLACQLATGNHLISHHLRRHFDFFMDQVLAYLLISASSSAATRVDDWISNWGKDEFTEMATASVGMAFLAFVAFAMSSLISGYALCHSSSM 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2222 285 MobiDBLite consensus disorder prediction 98 128 - -
Ssu1g2222 285 PANTHER CASP-LIKE PROTEIN 70 284 - -
Ssu1g2222 285 MobiDBLite consensus disorder prediction 1 28 - -
Ssu1g2222 285 Pfam Casparian strip membrane protein domain 133 267 IPR006702 -
Ssu1g2222 285 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 70 284 - -
Ssu1g2222 285 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2222 Ssu-Chr1 63025169 63027861 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2222 - - gmx:100789870 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2222 1 63025169 63027861 Ssu6g1366 6 22341112 22342378 ECH
Ssu1g2222 1 63025169 63027861 Ssu1g2222 1 63025169 63027861 ECH
Ssu6g1366 6 22341112 22342378 Ssu1g2222 1 63025169 63027861 PCT