Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1345 ATGGCTGCAACAGCTTCAAGGTTCATCAAGTGTGTGACCGTTGGGGATGGAGCTGTGGGCAAAACCTGCATGCTCATTTGCTACACAAGCAACAAATTCCCCACGGACTATATTCCGACGGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAGGCATGACTGTCAATTTAGGCCTTTGGGACACTGCTGGGCAAGAGGATTACAACAGGCTGAGGCCTTTGAGCTACAGGGGAGCAGATGTCTTTGTCTTGGCTTTCTCTTTAGTTAGTCATGCAAGCTACGAAAATGTGTTGAAGAAGTGGCTCCCTGAACTCCAGCATTTTGCTCCTGGAGTCCCAGTGGTGCTAGTTGGTACCAAATTGGATCTCCGAGAAGACAAGCACTATTTGGCTGATCATCCTGGTCTGGTGCCTGTGACTTCTGAGCAAGGTGAGGAATTGCGTAAACTGGTAGGAGCTACATATTATATAGAGTGCAGCTCAAAAACTCAGCAAAATGTGAAGTTAGTTTTTGATGCTGCTATCAAGGTGGTCATCAAGCCTccacaaaaacaagagaagaagaaaaaaccaCGTAGAGGGTGTCTACTAAATGTCATCTGTGGAAGGAATATAGTTCGTCTTAAATGA 633 0.4344 MAATASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGMTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSHASYENVLKKWLPELQHFAPGVPVVLVGTKLDLREDKHYLADHPGLVPVTSEQGEELRKLVGATYYIECSSKTQQNVKLVFDAAIKVVIKPPQKQEKKKKPRRGCLLNVICGRNIVRLK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1345 210 SMART rab_sub_5 9 182 - -
Ssu6g1345 210 TIGRFAM small_GTP: small GTP-binding protein domain 9 173 IPR005225 GO:0005525
Ssu6g1345 210 PANTHER GTPASE, PUTATIVE-RELATED 1 203 - -
Ssu6g1345 210 Gene3D - 2 199 IPR027417 -
Ssu6g1345 210 CDD Rop_like 8 180 - -
Ssu6g1345 210 ProSiteProfiles small GTPase Rab1 family profile. 4 210 - -
Ssu6g1345 210 ProSiteProfiles small GTPase Ras family profile. 4 198 IPR001806 GO:0003924|GO:0005525
Ssu6g1345 210 SMART ras_sub_4 6 182 - -
Ssu6g1345 210 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Ssu6g1345 210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Ssu6g1345 210 PRINTS Transforming protein P21 ras signature 9 30 - -
Ssu6g1345 210 PRINTS Transforming protein P21 ras signature 111 124 - -
Ssu6g1345 210 PRINTS Transforming protein P21 ras signature 157 179 - -
Ssu6g1345 210 PRINTS Transforming protein P21 ras signature 32 48 - -
Ssu6g1345 210 PRINTS Transforming protein P21 ras signature 49 71 - -
Ssu6g1345 210 Pfam Ras family 10 179 IPR001806 GO:0003924|GO:0005525
Ssu6g1345 210 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Ssu6g1345 210 PANTHER RHO FAMILY GTPASE 1 203 IPR003578 GO:0005525|GO:0007264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1345 Ssu-Chr6 22004713 22008151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1345 9 182 EF-hand Containing Proteins AT5G27540 24.138 1.53e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1345 K04392 - gmx:100806681 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1345 6 22004713 22008151 Ssu6g1345 6 22004713 22008151 ECH
Ssu6g1345 6 22004713 22008151 Ssu1g2203 1 62561903 62565261 PCT