Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2203 ATGGCTGCAACTGCACCAAGATTCATCAAGTGTGTGACCGTAGGGGACGGTGCTGTGGGAAAGACCTGCATGCTCATTTGCTATACCAGCAACAAATTCCCCACTGACTATATTCCCACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAGGCACAACTGTCAATTTAGGCCTTTGGGATACAGCTGGGCAAGAGGATTACAACAGGCTGAGGCCTTTGAGCTACAGGGGGGCAGATGTCTTTGTCTTGGCTTTTTCTTTAGTTAGTCGCGCAAGCTATGAGAATGTGTTGAAGAAGTGGATCCCAGAACTCCAGCATTTTGCCCCAGGCATCCCGTTGGTATTAGTTGGTACCAAATTGGATCTGCGAGAAGACAAACACTATATGGCTGATCATCCTGGCTTGGTGCCCGTGACTACTGAGCAAGGTGAGGAACTCCGTAAACAGATTGGAGCTACCTATTATATTGAGTGCAGCTCAAAAACTCAGCAGAATGTCAAGGCAGTTTTTGACGCTGCGATCAGAATGGTCATCAAGCCTCCACAAAAGCAAAgcgagaagaggaagaaaaaaccACGAGGCTGTTTCCTGTCAGTATACTTTTTCCGTATTATATCTAAcagctttatatattttttgtggagGGGGAGCAACGCACTAACACTTTTCCTTTGA 681 0.4288 MAATAPRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHFAPGIPLVLVGTKLDLREDKHYMADHPGLVPVTTEQGEELRKQIGATYYIECSSKTQQNVKAVFDAAIRMVIKPPQKQSEKRKKKPRGCFLSVYFFRIISNSFIYFLWRGSNALTLFL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2203 226 Gene3D - 3 199 IPR027417 -
Ssu1g2203 226 Pfam Ras family 10 180 IPR001806 GO:0003924|GO:0005525
Ssu1g2203 226 SMART rab_sub_5 9 182 - -
Ssu1g2203 226 PANTHER - 1 204 - -
Ssu1g2203 226 ProSiteProfiles small GTPase Ras family profile. 4 223 IPR001806 GO:0003924|GO:0005525
Ssu1g2203 226 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Ssu1g2203 226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Ssu1g2203 226 TIGRFAM small_GTP: small GTP-binding protein domain 9 173 IPR005225 GO:0005525
Ssu1g2203 226 CDD Rop_like 8 180 - -
Ssu1g2203 226 SMART ras_sub_4 6 182 - -
Ssu1g2203 226 PRINTS Transforming protein P21 ras signature 111 124 - -
Ssu1g2203 226 PRINTS Transforming protein P21 ras signature 32 48 - -
Ssu1g2203 226 PRINTS Transforming protein P21 ras signature 49 71 - -
Ssu1g2203 226 PRINTS Transforming protein P21 ras signature 157 179 - -
Ssu1g2203 226 PRINTS Transforming protein P21 ras signature 9 30 - -
Ssu1g2203 226 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Ssu1g2203 226 ProSiteProfiles small GTPase Rab1 family profile. 4 208 - -
Ssu1g2203 226 PANTHER RHO FAMILY GTPASE 1 204 IPR003578 GO:0005525|GO:0007264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2203 Ssu-Chr1 62561903 62565261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2203 5 195 EF-hand Containing Proteins AT5G27540 24.352 9.95e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2203 K04392 - gmx:100499774 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1345 6 22004713 22008151 Ssu1g2203 1 62561903 62565261 PCT