Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1340 ATGAGCCACAGCCACATCCGCCAAAGGATCAGCTACCAAGTGTTTCTTACTGCATTACGAGTCCTCCTCCATGGCGTGAGTCTCTCTGATCACAGATTCTGTTTTTGTGCTCTTGCTTTGAACCTGATTCTTCTGTTATCTTTACCGATATGCCGAGCCATACTTCTTGGTTTTCAACATTATCTTGTGATGCTCGGTACAACTGTGCTAATTCCCACTGCACTTGTTCCCCAGATGGGAGGTGGCAATGAGGAGAAGGCAAAAGTTATCCAAACACTACTTTTTGTAGCTGGAATTAACACCTTGCTGCAAACTCTGTTTGGAACTCGATTGCCTGCAGTAATTGGAGGGTCTTATACTTATGTTCCAACAACAATCTCTATTATTCTTGCTGGTCGATTCAGTGACGAGCCAGATCCTATAGAGAAATTCAAGAGGATAATGCGGGCAACCCAAGGTGCTCTTATTGTTGCTTCAACTCTTCAAATAGTACTAGGCTTTAGTGGCCTTTGGCGTAATGTTGCAAGGTTCTTAAGTCCACTTTCAGCTGTTCCTTTGGTATCTCTTGTTGGTTTTGGGCTTTACGAGTTGGGCTTTCCTGGgGTTGCTAAATGTATAGAGATTGGACTGCCAGAGCTTATATTGCTAGTATTTGTTTCACAGTTTGTACCCCATGTGCTACATGCAGGAAAACATGTCTTCGACCGTTTTGCTGTTCTATTTACAGTTGCAATTGTGTGGTTATATGCTTATCTGCTCACTGTTGGAGGGGCCTACAACCATGCTGCACCTAAAACACAAGCAACCTGCCGCACTGATCGTGCTGGTTTAATAGAAGCTGCCCCATGGATACGAGTTCCATATCCGTTTCAATGGGGAGCACCTTCATTTGATGCAGGTGAAGCCTTTGCCATGATGATGGCATCCTTTGTTGCTCTTGTAGAGTCCAGTGGAGCTTATATTGCTGTTTATCGGTATGCAAGTGCAACACCATTACCACCATCTATTCTTAGTCGCGGCATCGGTTGGCAGGGAGTTGCCATTCTGTTATCAGGATTGTTTGGAACTGGCAATGGATCCTCTGTATCTGTAGAAAATGCTGGTCTTTTGGCCTTGACTCGTGTTGGCAGTCGAAGAGTGGTGCAAATATCTGctggttttatgtttttcttttcaattctcggGAAATTTGGAGCCGTTTTTGCCTCAATTCCACCTCCCATTGTTGCTGCACTGTACTGCTTGTTCTTTGCTTATGTTGGAGCGGGAGGTTTAAGTTTTCTTCAATTCTGCAACCTCAACAGTTTTAGAACAAAGTTTGTATTAGGCTTCTCCATCTTCCTGGGCTTGTCTGTGTCACAGTACTTCAACGAGTACACAGCAATTAATGGTTTTGGTCCAGTTCACACTAAAGCAAGATGGTTCAATGATATAATCAACGTCCCGTTCCAATCAAAAGCATTCGTTGCGGGTTGTGTGGCATATTTCCTGGATAACACACTACATAAGAAGGAAGGTACTATTCGGAAAGATAGAGGAAAACATTGGTGGGACAAGTACCGGTCCTTCAAGACTGACTCAAGAAGTGAGGAGTTTTATTCACTGCCTTTCAACCTAAACAAATACTTTCCGTCGTGTAACTGTGTACCTGAACTAATAGGGGGCTTCATCGAATATTGA 1680 0.4292 MSHSHIRQRISYQVFLTALRVLLHGVSLSDHRFCFCALALNLILLLSLPICRAILLGFQHYLVMLGTTVLIPTALVPQMGGGNEEKAKVIQTLLFVAGINTLLQTLFGTRLPAVIGGSYTYVPTTISIILAGRFSDEPDPIEKFKRIMRATQGALIVASTLQIVLGFSGLWRNVARFLSPLSAVPLVSLVGFGLYELGFPGVAKCIEIGLPELILLVFVSQFVPHVLHAGKHVFDRFAVLFTVAIVWLYAYLLTVGGAYNHAAPKTQATCRTDRAGLIEAAPWIRVPYPFQWGAPSFDAGEAFAMMMASFVALVESSGAYIAVYRYASATPLPPSILSRGIGWQGVAILLSGLFGTGNGSSVSVENAGLLALTRVGSRRVVQISAGFMFFFSILGKFGAVFASIPPPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRTKFVLGFSIFLGLSVSQYFNEYTAINGFGPVHTKARWFNDIINVPFQSKAFVAGCVAYFLDNTLHKKEGTIRKDRGKHWWDKYRSFKTDSRSEEFYSLPFNLNKYFPSCNCVPELIGGFIEY 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1340 559 Pfam Permease family 53 456 IPR006043 GO:0016020|GO:0022857|GO:0055085
Ssu6g1340 559 PANTHER XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER 49 545 - -
Ssu6g1340 559 PANTHER NUCLEOBASE-ASCORBATE TRANSPORTER-LIKE PROTEIN 49 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1340 Ssu-Chr6 21934573 21940971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1340 49 545 Organic Solute Cotransporters AT5G49990 81.489 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1340 - - gmx:100791553 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1340 6 21934573 21940971 Ssu6g1340 6 21934573 21940971 ECH
Ssu6g1340 6 21934573 21940971 Ssu1g2200 1 62507032 62512346 PCT