Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2200 ATGGCAGGAGGAGGAGGAGCACCCAAAGCAGATGAGCCACAGCCACATCCACCAAAGGATCAGCTGCCCAATATTTCATACTGCATTACTAGTCCTCCCCCATGGCCTGAGGCCATACTTCTTGGTTTTCAACATTTTCTTGTGATGCTCGGCACAACTGTGCTCATTCCCACTGCTCTTGTTCCCCAGATGGGAGGTGGCAACGAGGAGAAGGCAAGAGTTATTGAAACACTGCTTTTTGTAGCTGGTATTAACACATTGCTGCAAACACTGTTTGGAACTCGACTGCCTGCAGTAATTGGAGGGTCTTACACCTTTGTTCCAACCACAATCTCAATTATCCTTGCTGGCCGATTCAGTAGTGAACCAGATCCTATAGAGAAATTCAAGAGGATAATGAGGGCGATCCAGGGTGCTCTTATTGTTGCTTCAACTCTTCAAATAGTACTAGGCTTCAGTGGTCTCTGGCGTAATGTTGCAAGGTTCTTAAGTCCACTTTCGGCAGTTCCTTTGGTATCTCTTGTTGGTTTTGGGCTATATGAGTTAGGGTTCCCTGGGGTTGCTAAATGTGTAGAGATCGGACTACCTGAGCTTATATTGCTAGTTTTTATCTCACAGTATGTGCCCCATGTGCTACCTGTGGGGAAACATCTCTTCGACCGTTTTGCTGTTATATTTACAATTGCAATTGTGTGGATATATGCTCATCTACTTACTGTTGGAGGGGCCTATAATGATGCTGCACCTAAAACTCAGGCATCATGCCGCACTGATCGTGCTGGACTTATAGATGCTGCTCCTTGGATAAGAATTCCATATCCCTTTCAATGGGGAGCACCTTCATTTGATGCAGGTGAAGCCTTTGCCATGATGATGGCAGCTTTTGTTGCTCTTGTAGAGTCCAGTGGAGCTTTCATTGCTGTATATAGGTATGCAAGTGCAACACCATTACCGCCGTCTATTCTCAGTCGGGGTATTGGTTGGCAGGGTGTTGGCATTCTGCTATCAGGATTGTTTGGAACAGTCAATGGATCATCTGTGTCCGTAGAGAATGCTGGTCTGTTGGCTTTGACACGCGTTGGAAGTAGAAGAGTGGTGCAAATATCTGCTGGatttatgattttcttttcaattcttgGAAAATTTGGAGCAGTTTTTGCCTCCATCCCACCTCCCATTATTGCTGCCCTGTACTGCTTGTTCTTTGCTTATGTTGGTGCGGGTGGTCTTAGTTTTCTTCAGTTCTGCAACCTCAACAGTTTTAGAACAAAGTTCATCTTAGGCTTCTCAATCTTCTTGGGCTTGTCTGTGCCACAGTACTTTAACGAGTACACAGCAATTAATGGTTTTGGTCCAGTCCACACAGGCGCAAGATGGTTCAATGATATAATCAACGTCCCATTCCAATCAAAACCATTTGTTGCGGGTGTTGTGGCATATTTTCTAGACAACactttatttaagagaaaagatGGTATTAGGAAGGACAGAGGAAAACATTGGTGGGACAAGTACAAGTCCTTCAAGGGTGACTCAAGAAGTGAGGAGTTTTATTCACTGCCTTTCAATCTAAACAAGTATTTCCCCTCTGTTTAA 1596 0.4373 MAGGGGAPKADEPQPHPPKDQLPNISYCITSPPPWPEAILLGFQHFLVMLGTTVLIPTALVPQMGGGNEEKARVIETLLFVAGINTLLQTLFGTRLPAVIGGSYTFVPTTISIILAGRFSSEPDPIEKFKRIMRAIQGALIVASTLQIVLGFSGLWRNVARFLSPLSAVPLVSLVGFGLYELGFPGVAKCVEIGLPELILLVFISQYVPHVLPVGKHLFDRFAVIFTIAIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRIPYPFQWGAPSFDAGEAFAMMMAAFVALVESSGAFIAVYRYASATPLPPSILSRGIGWQGVGILLSGLFGTVNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPPPIIAALYCLFFAYVGAGGLSFLQFCNLNSFRTKFILGFSIFLGLSVPQYFNEYTAINGFGPVHTGARWFNDIINVPFQSKPFVAGVVAYFLDNTLFKRKDGIRKDRGKHWWDKYKSFKGDSRSEEFYSLPFNLNKYFPSV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2200 531 Pfam Permease family 37 441 IPR006043 GO:0016020|GO:0022857|GO:0055085
Ssu1g2200 531 MobiDBLite consensus disorder prediction 1 25 - -
Ssu1g2200 531 PANTHER XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER 2 531 - -
Ssu1g2200 531 PANTHER NUCLEOBASE-ASCORBATE TRANSPORTER-LIKE PROTEIN 2 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2200 Ssu-Chr1 62507032 62512346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2200 7 531 Organic Solute Cotransporters AT5G49990 80.418 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2200 - - gmx:100812585 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2200 1 62507032 62512346 Ssu1g2200 1 62507032 62512346 ECH
Ssu6g1340 6 21934573 21940971 Ssu1g2200 1 62507032 62512346 PCT