Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1339 atgGGGAATTGCCAAGCCGTTGACACTGCAACTCTAGTTATACAGCAACCCAATGGAAAAGTAGAAAGGTTGTATTGGCCTGTGAGTGCTAGTGAAGTGATGAAGGCCAACCCTGATCACTATGTTGCTCTTCTTATCTCCACCACATTGTGCACATCCAAGGACAATGAAAATTACCCAAATAAGAGTGACAACAACACCAACCAACACCAACAACCCTGTTCGCCTTACCCGCATCAAGCTTCTCAAGCCAACAGATACCCTTATGCTTGGCCAAAGGTTATGAAGGGTCTTTGGGCAAAGAAACAAGCAAAGATGAAGAGAAACTTGTCCGAATCAGCACAAAAGCCAAATCTGATGAAGGAAAGGACAGACAAAGCAGCAAGGACGTCTGAGCCGGAGGACAACCAGGAAACCAAACTTGAAAGACATGGGTCAAGGATAACATCAACTAATAATGCTGCTAGTGCCACAGCTAAGTCAAGAACATGGCAACCCTCTTTACAAAGCATCTCAGAGGCAGCCAGCTGA 531 0.452 MGNCQAVDTATLVIQQPNGKVERLYWPVSASEVMKANPDHYVALLISTTLCTSKDNENYPNKSDNNTNQHQQPCSPYPHQASQANRYPYAWPKVMKGLWAKKQAKMKRNLSESAQKPNLMKERTDKAARTSEPEDNQETKLERHGSRITSTNNAASATAKSRTWQPSLQSISEAAS 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1339 176 MobiDBLite consensus disorder prediction 118 145 - -
Ssu6g1339 176 MobiDBLite consensus disorder prediction 56 82 - -
Ssu6g1339 176 MobiDBLite consensus disorder prediction 102 176 - -
Ssu6g1339 176 Pfam PADRE domain 1 173 IPR025322 -
Ssu6g1339 176 PANTHER EXPRESSED PROTEIN 93 176 - -
Ssu6g1339 176 MobiDBLite consensus disorder prediction 146 176 - -
Ssu6g1339 176 PANTHER DUF4228 DOMAIN PROTEIN 1 70 - -
Ssu6g1339 176 PANTHER DUF4228 DOMAIN PROTEIN 93 176 - -
Ssu6g1339 176 PANTHER EXPRESSED PROTEIN 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1339 Ssu-Chr6 21913990 21915126 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1339 - - gmx:100500500 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1339 6 21913990 21915126 Ssu6g1339 6 21913990 21915126 ECH
Ssu6g1339 6 21913990 21915126 Ssu1g2198 1 62470518 62471681 PCT