Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1336 ATGGCATTACGCGAGCTTCTTGTAATGGGGATATTGCTGCTGGTTTGCCTTGCTAAGGTTTCATCTGATGTTAAcatagaaaaggaagaagacgAAGAACTTCGCTTTCCTAATGACCCGCTTAACGTGAGAGACGGCAACAGAAGGCTAATGCAAGACATAGATTGCGGAGGATTGTGCAAGTCAAGGTGCAGTGCACATTCGAGGCCCAACGTGTGCCATAGGGCTTGTGGCACATGCTGTGTGAGGTGTAAGTGTGTACCACCTGGTACTGCCGGCAATAGGGAGCTCTGTGGGACTTGCTATACTGATATGACCACCCACGGCAACAAGACCAAGTGCCCTTAG 348 0.4713 MALRELLVMGILLLVCLAKVSSDVNIEKEEDEELRFPNDPLNVRDGNRRLMQDIDCGGLCKSRCSAHSRPNVCHRACGTCCVRCKCVPPGTAGNRELCGTCYTDMTTHGNKTKCP 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1336 115 Pfam Gibberellin regulated protein 55 115 IPR003854 -
Ssu6g1336 115 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 3 115 - -
Ssu6g1336 115 PANTHER GIBBERELLIN-REGULATED PROTEIN 2-RELATED 3 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1336 Ssu-Chr6 21852995 21853982 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1336 - - gmx:100793143 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1336 6 21852995 21853982 Ssu6g1336 6 21852995 21853982 ECH
Ssu6g1336 6 21852995 21853982 Ssu1g2194 1 62405783 62406739 PCT