Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2194 ATGGCGCCACGCGTACTTCTTGTGTTGGGGATGTTGCTGCTGGTGTGCCTCGTTAAGGTTTCATCTGATCTGAAGGTAGAAGAAGGAATAGTGGAAGAGGAAGAACTGCACTTTCCCAATGAGCCACTCATCGTGAGAGACGGGAACAGAAGGCTAATGCAGGACATAGATTGTGGTGGGTTGTGCAAGACGAGGTGCAGTGCTCATTCGAGGCCCAACCTGTGCAGTAGGGCGTGTGGAACGTGCTGTGTGAGGTGCAAGTGTGTCCCACCTGGTACCTCTGGAAATAGGGAACTCTGTGGAACTTGCTACACTGATATGACCACCCATGCCAACAAGACCAAGTGCCCTTAA 354 0.5169 MAPRVLLVLGMLLLVCLVKVSSDLKVEEGIVEEEELHFPNEPLIVRDGNRRLMQDIDCGGLCKTRCSAHSRPNLCSRACGTCCVRCKCVPPGTSGNRELCGTCYTDMTTHANKTKCP 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2194 117 Pfam Gibberellin regulated protein 57 117 IPR003854 -
Ssu1g2194 117 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 13 117 - -
Ssu1g2194 117 PANTHER GIBBERELLIN-REGULATED PROTEIN 2-RELATED 13 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2194 Ssu-Chr1 62405783 62406739 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2194 - - gmx:100305516 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2194 1 62405783 62406739 Ssu1g2194 1 62405783 62406739 ECH
Ssu6g1336 6 21852995 21853982 Ssu1g2194 1 62405783 62406739 PCT