Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1331 ATGGAACACAGCAGATCCTTCAACGACTCCAATCGCCTCTCTTCACAGCGCAGCCTCGCCTCAGTCCCTTCTCTAAACTCACACTCTCACGTCCTCACCACCTCCCACACCTGCCTCACCACTCTCAAAGCCCACACCTCCTACACCTCCTCCCTCACCCTCGCAGGCAAGTTCCTCTACGCAGCCTCGTCCGACCGAGAAATCCGATCCTGGAACCACGCCCATTTCCACTCCCAACAACAACCACCAACCACCAACACCGTAGCCGCCGGAAAGGGCGCCGTGAAGTCCGTCGCGGTCCACTCCGACAAACTCTTCAGCGCCCACCAAGACCACAAAATCCGCGTCTGGAAGATCACCAACCTCGAACGCGACCAGCAGAAGTACACGCGTTTGGCGACGCTCCCAACGCTCGGGGACCGTGTCTCGAAGATCTTGGTCCCGAAAAACCACGTGCAGATTCGCCGGCACAAAAAGTGCACGTGGGTTCACCACGTGGACGCCGTTTCCTCCCTGGCCTTGTCCCACGACGGGACCTTGCTGTATTCCGTCTCATGGGACAGGACAATTAAGGTTTGGCGAACAAAAGACTTCGCGTGTTTGGAATCCGTGCGTAACGCGCATGACGATGCCATTAACGCGGTCGCGGTTTCTTGCGATGGGCACGTGTACACCGGATCCGCGGACAAGAGAATCAAGGTTTGGAAGAGAGAGTCGGGGGAGAAGAAACACTCGCTGGTGGATACTTTAGAGAAACACAACTCTGGGATTAATGCGTTGGCTCTTGGCGGTGACGGGTCTGTGTTGTATTCTGGTGCATGTGACAGGTCGATATTGGTTTCGGAGAAGGGCGAGAATGGTAAATTGGTGGTGGTTGGTGCGCTGAGGGGGCACACTAAGTCGATTTTGTGCTTGGCTGTGGTTTCGGATTTGGTGTGTAGTGGTTCGGAGGATAAAACGATTCGGATTTGGAGAGGGGTTCGGAAGGAGTATTCGTGTTTAGCTGTTTTGGAAGGGCATAGGAGTCCAATTAAGAGCCTAACTGCAGCGGTTGATCGTAGGGATGACCCCTCGGAAGCATCTTTTCTTGTCTATAGTGGCAGTTTGGACTGTGATGTTAAGGTTTGGCAGGTTTTTGTTCCTGTTCTTTGA 1152 0.5408 MEHSRSFNDSNRLSSQRSLASVPSLNSHSHVLTTSHTCLTTLKAHTSYTSSLTLAGKFLYAASSDREIRSWNHAHFHSQQQPPTTNTVAAGKGAVKSVAVHSDKLFSAHQDHKIRVWKITNLERDQQKYTRLATLPTLGDRVSKILVPKNHVQIRRHKKCTWVHHVDAVSSLALSHDGTLLYSVSWDRTIKVWRTKDFACLESVRNAHDDAINAVAVSCDGHVYTGSADKRIKVWKRESGEKKHSLVDTLEKHNSGINALALGGDGSVLYSGACDRSILVSEKGENGKLVVVGALRGHTKSILCLAVVSDLVCSGSEDKTIRIWRGVRKEYSCLAVLEGHRSPIKSLTAAVDRRDDPSEASFLVYSGSLDCDVKVWQVFVPVL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1331 383 SUPERFAMILY WD40 repeat-like 35 378 IPR036322 GO:0005515
Ssu6g1331 383 CDD WD40 38 377 - -
Ssu6g1331 383 PRINTS G protein beta WD-40 repeat signature 223 237 IPR020472 -
Ssu6g1331 383 PRINTS G protein beta WD-40 repeat signature 181 195 IPR020472 -
Ssu6g1331 383 PRINTS G protein beta WD-40 repeat signature 312 326 IPR020472 -
Ssu6g1331 383 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 324 IPR001680 GO:0005515
Ssu6g1331 383 SMART WD40_4 330 377 IPR001680 GO:0005515
Ssu6g1331 383 SMART WD40_4 81 118 IPR001680 GO:0005515
Ssu6g1331 383 SMART WD40_4 155 194 IPR001680 GO:0005515
Ssu6g1331 383 SMART WD40_4 35 72 IPR001680 GO:0005515
Ssu6g1331 383 SMART WD40_4 288 325 IPR001680 GO:0005515
Ssu6g1331 383 SMART WD40_4 197 236 IPR001680 GO:0005515
Ssu6g1331 383 SMART WD40_4 243 282 IPR001680 GO:0005515
Ssu6g1331 383 Gene3D - 6 152 IPR015943 GO:0005515
Ssu6g1331 383 ProSiteProfiles Trp-Asp (WD) repeats profile. 162 203 IPR001680 GO:0005515
Ssu6g1331 383 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 324 - -
Ssu6g1331 383 Gene3D - 153 380 IPR015943 GO:0005515
Ssu6g1331 383 MobiDBLite consensus disorder prediction 1 26 - -
Ssu6g1331 383 MobiDBLite consensus disorder prediction 8 26 - -
Ssu6g1331 383 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 245 IPR001680 GO:0005515
Ssu6g1331 383 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 383 IPR045182 -
Ssu6g1331 383 Pfam WD domain, G-beta repeat 163 193 IPR001680 GO:0005515
Ssu6g1331 383 Pfam WD domain, G-beta repeat 201 236 IPR001680 GO:0005515
Ssu6g1331 383 Pfam WD domain, G-beta repeat 332 376 IPR001680 GO:0005515
Ssu6g1331 383 Pfam WD domain, G-beta repeat 293 324 IPR001680 GO:0005515
Ssu6g1331 383 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 1 383 - -
Ssu6g1331 383 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 162 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1331 Ssu-Chr6 21776479 21777630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1331 207 377 Acyl Lipid Metabolism Gene Families AT3G18860 27.222 4.26e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1331 - - gmx:100801906 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2190 1 62283787 62285002 Ssu6g1331 6 21776479 21777630 ECH
Ssu6g1331 6 21776479 21777630 Ssu6g1331 6 21776479 21777630 ECH
Ssu6g1331 6 21776479 21777630 Ssu1g2190 1 62283787 62285002 PCT