Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2190 ATGGAACACCCGCGATCTTATAGtgtctcttcctcttcttcttacTCCAACCACCACCAATTACCAGGGTCCCCAACCCTGACTTCACAACACAGCCTCGCGTCAGTTCCATCCCTCAACAAATCCCAGTCCCACCACCACTGCCTCGCAACCCTCAGAGGCCACACCTCCTACATCTCCTCCCTAACCCTCTCCGGCAAATTCCTCTACACAGGCTCATCCGACAGAGAAATCAGAACCTGGAACCGCTCCCAACCAGAGAACTCAACCGCCGACACGGCAGTACTCGCCGGAAACGGCGCCGTTAAGTCCTTGGTAATCCAATCCAACAAACTCTTCAGCGCGCACCAAGACCACAAAATCCGCGTCTGGAAAATCAGCAACGGTAGCACTAACAATAACGACCGAGAACGCGACCGCCAAAAATACACCCACTTAGCCACACTCCCCACATTTGGCGACCGCGCCTCGAAGGTGCTGATCCCCAAGAACCGCGTCCAAATCCGAAGGCACAAAAAATGCACGACAATCAAAATCTGGAGAACCAAAGACTTCACGTGTTTGGAGTCGGTGACCAGCGCACACGAAGATGCCATAAATGCTGTCGCAGTTTCTCGCGATGGGTATGTCTACACCGGATCAGCGGATAAGAGAATCAGGGTGTGGAGGAAAGAGGAAGGGGAAAAGAAACACACGTTAGTGGAGACCTTGGAGAGGCACAACTCTGGGGTCAATGCCTTGGCTCTGAGCAGCGACGAGACCCTGCTGTATTCGGGTGCGTGTGACAGGTCCGTTTTGGTTTGGGAGAAATTAGAGGGAAGTGGTGGCAAAATGGGGCTGGTGGGTGCGCTGAGGGGGCACACTAAGTCCGTATTGTGTTTGGCGGTTGTGGCGGATTTGGTGTGCAGTGGCTCTGCGGATAAAACGATTAGGATTTGGAGAGGCGTTCGTGCGCAATATTCTTGTTTAGCTGTTTTGGAAGGACACACGGGTTCGATTAAGTGCATAACCGCAGTGGTTGACCATTGTAATAACCCGTCGCAGTCCCAAGCATCTTTTCTAGTCTATAGTGGCGGTTTAGACTGCGATATTAAGGTTTGGCAGATTTTAGTTCCTCTAggtataatattttag 1134 0.5053 MEHPRSYSVSSSSSYSNHHQLPGSPTLTSQHSLASVPSLNKSQSHHHCLATLRGHTSYISSLTLSGKFLYTGSSDREIRTWNRSQPENSTADTAVLAGNGAVKSLVIQSNKLFSAHQDHKIRVWKISNGSTNNNDRERDRQKYTHLATLPTFGDRASKVLIPKNRVQIRRHKKCTTIKIWRTKDFTCLESVTSAHEDAINAVAVSRDGYVYTGSADKRIRVWRKEEGEKKHTLVETLERHNSGVNALALSSDETLLYSGACDRSVLVWEKLEGSGGKMGLVGALRGHTKSVLCLAVVADLVCSGSADKTIRIWRGVRAQYSCLAVLEGHTGSIKCITAVVDHCNNPSQSQASFLVYSGGLDCDIKVWQILVPLGIIF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2190 377 PRINTS G protein beta WD-40 repeat signature 69 83 IPR020472 -
Ssu1g2190 377 PRINTS G protein beta WD-40 repeat signature 355 369 IPR020472 -
Ssu1g2190 377 PRINTS G protein beta WD-40 repeat signature 301 315 IPR020472 -
Ssu1g2190 377 Pfam WD domain, G-beta repeat 48 82 IPR001680 GO:0005515
Ssu1g2190 377 Pfam WD domain, G-beta repeat 188 222 IPR001680 GO:0005515
Ssu1g2190 377 Pfam WD domain, G-beta repeat 234 268 IPR001680 GO:0005515
Ssu1g2190 377 Pfam WD domain, G-beta repeat 281 313 IPR001680 GO:0005515
Ssu1g2190 377 Pfam WD domain, G-beta repeat 321 367 IPR001680 GO:0005515
Ssu1g2190 377 Gene3D - 174 371 IPR015943 GO:0005515
Ssu1g2190 377 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 48 333 IPR011047 -
Ssu1g2190 377 Gene3D - 31 161 IPR015943 GO:0005515
Ssu1g2190 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 52 82 - -
Ssu1g2190 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 232 IPR001680 GO:0005515
Ssu1g2190 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 313 - -
Ssu1g2190 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 52 91 IPR001680 GO:0005515
Ssu1g2190 377 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 175 IPR045182 -
Ssu1g2190 377 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 176 372 IPR045182 -
Ssu1g2190 377 SMART WD40_4 184 223 IPR001680 GO:0005515
Ssu1g2190 377 SMART WD40_4 230 269 IPR001680 GO:0005515
Ssu1g2190 377 SMART WD40_4 319 368 IPR001680 GO:0005515
Ssu1g2190 377 SMART WD40_4 89 125 IPR001680 GO:0005515
Ssu1g2190 377 SMART WD40_4 277 314 IPR001680 GO:0005515
Ssu1g2190 377 SMART WD40_4 45 82 IPR001680 GO:0005515
Ssu1g2190 377 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 176 372 - -
Ssu1g2190 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 313 IPR001680 GO:0005515
Ssu1g2190 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 237 269 - -
Ssu1g2190 377 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 9 175 - -
Ssu1g2190 377 MobiDBLite consensus disorder prediction 1 39 - -
Ssu1g2190 377 CDD WD40 48 368 - -
Ssu1g2190 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 269 IPR001680 GO:0005515
Ssu1g2190 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2190 Ssu-Chr1 62283787 62285002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2190 194 368 Acyl Lipid Metabolism Gene Families AT3G18860 27.624 5.18e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2190 - - gmx:100777242 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2190 1 62283787 62285002 Ssu6g1331 6 21776479 21777630 ECH
Ssu1g2190 1 62283787 62285002 Ssu1g2190 1 62283787 62285002 ECH
Ssu6g1331 6 21776479 21777630 Ssu1g2190 1 62283787 62285002 PCT