Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1322 ATGTCGTCGTCAGCGCAGAACATAAAGCAGCGAGTCTTCACATGCCTAACCAAACTCTCCGACCGCGACACGCAGTCCCTCGCCGCCGCGGAACTCGAGTCCATCGCCCGAAACCTGGACGTAGCCACCGTGCCGGCGTTCCTCTCGTGCATGTACTCCACCGACGCGTCGGATAAACCGCCGGTGCGCAGGCAATGCGTGCAGCTCCTAGGGCTCCTCGCGGAGACGCACGGCAACGTGCTCGCGCCGTACCTGTCCAAAATCCTCGGCAGCGTCGTGCGGCGACTCCGAGACGCGGACTCGTCGGTGCGATCCGCGTGCGTGAGTTCGGTGGCGGCATTGTCGCGCCACGTCAGCAGGCAGCCGTTGGGTTCGTTTTTGAAGCCGTTGGCGGAGGCGCTGTTCACGGAGCAGGACCAGAACGCGCAGGCCGGCGCGGCGCTGTGTCTCGCCTCCGCGATCGACGGAGCCCCGGATCCGGACCCGGCCAGGCTGGCGAGGCTGCTGCCGAGGTTCGAGAAGCTTCTGAAGCGCGACGGCTTCAAGGCGAAGCCCGCGCTGCTGGCGCTCGTCGGAAGCGTCGTCGCGGCCGGCGGCGCGTCGGGCCACGCGCCGTTGAGGGGTTTGGTGCCTTGCTTGGTGGAGGCGTTGGGCAGCGACGATTGGGCTACGAGGAAGGCTGCGGCGGAGACTCTGGCGATTCTCGCCGACGTGGAGAGGGAGTTCTTGGCGGAGTTCAAGGCTGAGTGTGTGAGAGTTTTTGAGAATCGGCGGTTTGATAAGGTAAAGTTGGTTCGGGACGTTATGAACCAGATGTTGGAAGCGTGGAAGCAGGTTCCTGATGTTTCAGACGAAGTTACGCCCCCTCCTAAATCGCAATCTTCTTCGAAAGAGAATGCAAGTGATGGACGCTATCCCGCAGTCTCTCAAAATTCTTGTAGTCCTGGTTCAGTGATGGCTAATCTGCGGAAGAAATCCACTCCTTTTAGCAGATTCAATCCAGCAGGTAGTTCTTCTGCTAGCAATGCTAAGAACACGAGTGCTTCAAGTAGTAACAAGAGAATGAGTTCGTTTGTTTCCCGAAAATTAAACCACAAGAATTGGGACGCTCAAATTGCCGTGGCTGATCAGGGAGATCTTCAGGAGAGAGATGGAattgttttggaaaaaatggATAAAAGCAGATTTTCAAAGCCAGAAATGAAACGGGCACTGCTAAATAAAAGTTCTGAGGATAAAATACAAAAGTACGGTGGGTCCAAAGCTGGATCTCGTGTGGTTCCATATCATGAAGAGAGTCAAGACTCGGTTCCTGTCAGTATTGTCACTAAAGATTTCCATAGGAATGACAAAGGGAGTGAAGATTTATCTCTGATCCGTGATCAGTTACATCAGATTGAGAAGCAGCAGTCAAGTCTACTTGATCTTCTGCAGAAATTCATGGGAAGCTCACAAAATGGAATGCGTTCTTTGGAGACTCGTGTGCATGGCCTTGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTATATCAAGTGGAAGGATGACAAAATCTGATGCTACTGGTAACACATGTTGCTCGCTACCTGGAGCTGAATTTTTGAGCTCCAAATTCTGGAGGAAAACACAGGGCCGGTATTCAATCTCACGGTTCTCTAGATCAGGTGGCACCCCATCACTTGCTGCCGTGAACTACCAAGCCGACAGGAATGCTGAAACCAAGTCGACAAACCACAGATTTAGGCCTGATGGAGGCTTCATCACTAATCCGCTGGCAGAGGTTCATACGGATTCGAGGAATTTTGCTACATCGGAGCTAGTTTAA 1827 0.5315 MSSSAQNIKQRVFTCLTKLSDRDTQSLAAAELESIARNLDVATVPAFLSCMYSTDASDKPPVRRQCVQLLGLLAETHGNVLAPYLSKILGSVVRRLRDADSSVRSACVSSVAALSRHVSRQPLGSFLKPLAEALFTEQDQNAQAGAALCLASAIDGAPDPDPARLARLLPRFEKLLKRDGFKAKPALLALVGSVVAAGGASGHAPLRGLVPCLVEALGSDDWATRKAAAETLAILADVEREFLAEFKAECVRVFENRRFDKVKLVRDVMNQMLEAWKQVPDVSDEVTPPPKSQSSSKENASDGRYPAVSQNSCSPGSVMANLRKKSTPFSRFNPAGSSSASNAKNTSASSSNKRMSSFVSRKLNHKNWDAQIAVADQGDLQERDGIVLEKMDKSRFSKPEMKRALLNKSSEDKIQKYGGSKAGSRVVPYHEESQDSVPVSIVTKDFHRNDKGSEDLSLIRDQLHQIEKQQSSLLDLLQKFMGSSQNGMRSLETRVHGLELALDEISYDLAISSGRMTKSDATGNTCCSLPGAEFLSSKFWRKTQGRYSISRFSRSGGTPSLAAVNYQADRNAETKSTNHRFRPDGGFITNPLAEVHTDSRNFATSELV 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1322 608 Gene3D - 2 376 IPR011989 -
Ssu6g1322 608 MobiDBLite consensus disorder prediction 280 358 - -
Ssu6g1322 608 SUPERFAMILY ARM repeat 7 273 IPR016024 -
Ssu6g1322 608 PANTHER TORTIFOLIA1-LIKE PROTEIN 3 4 603 - -
Ssu6g1322 608 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 4 603 IPR033337 GO:0005874|GO:0008017
Ssu6g1322 608 MobiDBLite consensus disorder prediction 287 358 - -
Ssu6g1322 608 Pfam HEAT repeat 209 237 IPR000357 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1322 Ssu-Chr6 21621811 21624485 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1322 - - gmx:100789197 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1322 6 21621811 21624485 Ssu6g1322 6 21621811 21624485 ECH
Ssu6g1322 6 21621811 21624485 Ssu1g2174 1 61990912 61993985 PCT