Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2174 ATGCCTCCCTCCACAACCCACTCGCAGAGCGTAAAGCAGAGGGTGCTCACGTGCCTCACGAAGCTCTCGGACCGCGACACTCAAACCGCGGGAGCCGCGGAGCTCGAGTCCATCGCGCGAACCCTGGACCCGCACTCCGTTCCGGTGTTCCTCTCCTGCATTCACTCCGCCGACGCCTCGGACAAAACCCCCGTCCGCAAACAGTGCGTGCGCCTCGTGGCCACCCTCTCCCACGCGCACGGCGACGCGCTCTCGCCCTTCGTCGCCAAGATCCTCGCCAACCTCGTGCGCCGCCTCCGCGACCCGGACTCGTCGGTGCGAGCCGCGTGCGCCGACTCCGTCGCCGCGCTGTCGGCGCGCGTGACGAGGCAGCCGTTTTCCGCGTTCCTGAAGCCGCTGGCCGAGGCGCTGTTCACGGAGCAGGAGCCGCACTCGCAGGCCGGCGCGGCGCTGTGTCTGGCCTCCGCGATCGGCGGGGCTCCGGATCCGGACCCGGCCAGGCTGGCGAGGCTCCTCCCGAGGCTCGAGAAGCTTCTGAAGAGCAAGGTGTTTAGGGCCAAGCCCGCGCTGCTGGCGCTCGCCGGAAGCGTCGTGGAGGCCGGCGGCGCGTCGAGTCGCGGCGCGTTGAGGAATTTGGTGCCGTGCCTCGTGGAGGCGCTGAACAGCGAGGACTGGGCCACGAGGAAGGGTGCCGCCGAGGCGTTGAAGAAGCTCGCGATTGTGGAGAGGGACCTCTTGCCGGAGTTCAAGGCTGGATGTTTGAAAGTCTTCGAGGATCGCCGATTTGATAAGGTAAAGTTGGTTCGGGAGGTTATGAATCAGATGTTGGAGGCGTGGAGGCAGATTCCTGATGTTTCGGATGAGTTCTCTCCGCCTCCTCAATCGCAGTCTTCTTCGAAGGaGAATGCAAGTGATGGGCGCTATCCTCCTGTCTCTCAAAATTCATGTAGCCCAGGTTCTGTAATGAGTAAATTGAGGAAGAAATCGAGCCCAGTTAGCAAATCAACTCCATCAGATAGATCTGCTGCTAGGAATGCTAAAAGGATGAGTGCATTAAGTGGCAATCGGATGAGTTCAGGTGTTTTGCAGAAACTGAGCCATAACCATTGGGATGTTCGAATTGCTGTGTCAAATGTTCCTGATTGTGGTGAACATCAGCAGAGGGATGAAGATGTTTTGGAAAGAAGCAAAAAGGATAAAAGCAGATTTTTTAAGTCAGAAACAAAACGGGCTCTATTTGATAAAAATCCTGATGACAAGATGCATAAATTTGGTGGATCCAAAGCTGGATCTCGTGTCGTTCCTTGTTCTGAAGAGAGTCAAGACTCAGGTCCTGTCAGTAATGTAACTAAAGATCTCCATAGGAATGACAAAGAGAGTGAGGAATTATCTTTGATTCGTGCACAATTAGTTCAAATTGAGAAGCAGCAGTCAGGTCTGCTTGATCTTCTACAGAAATTCATTGGGAGCTCTGAAAATGGAATGCGTTCTTTAGAGACTCGTGTGCATGGCCTCGAGTTGGCATTGGATGATATCTCTTATGATTTGGCTGTATCAAGTGGAAGGATAACTAAATCTGATGCTCCTAAGAATACATGTTGCCTGATACCTGGTGCTGAATTTTTAAGCTCCAAATTCTGGAAGAAAACACCGGGCCGGTATTCATCCTACCGACTCGCTAAATCTGGTGGCACTCCATCACTAGCTTTCAGTCATTACAGAGCTAATAGGAATGCCAAAACTAAGTTGACAAGCCACAGATTTGGGGTCCATGGTGATGGAAGCTTCATCACTAATCCTCTGGcagagattaaaattaattcaaggGAGATTTCAGGCCCTGCAAGATCAGAGCTAGCTTGA 1863 0.5319 MPPSTTHSQSVKQRVLTCLTKLSDRDTQTAGAAELESIARTLDPHSVPVFLSCIHSADASDKTPVRKQCVRLVATLSHAHGDALSPFVAKILANLVRRLRDPDSSVRAACADSVAALSARVTRQPFSAFLKPLAEALFTEQEPHSQAGAALCLASAIGGAPDPDPARLARLLPRLEKLLKSKVFRAKPALLALAGSVVEAGGASSRGALRNLVPCLVEALNSEDWATRKGAAEALKKLAIVERDLLPEFKAGCLKVFEDRRFDKVKLVREVMNQMLEAWRQIPDVSDEFSPPPQSQSSSKENASDGRYPPVSQNSCSPGSVMSKLRKKSSPVSKSTPSDRSAARNAKRMSALSGNRMSSGVLQKLSHNHWDVRIAVSNVPDCGEHQQRDEDVLERSKKDKSRFFKSETKRALFDKNPDDKMHKFGGSKAGSRVVPCSEESQDSGPVSNVTKDLHRNDKESEELSLIRAQLVQIEKQQSGLLDLLQKFIGSSENGMRSLETRVHGLELALDDISYDLAVSSGRITKSDAPKNTCCLIPGAEFLSSKFWKKTPGRYSSYRLAKSGGTPSLAFSHYRANRNAKTKLTSHRFGVHGDGSFITNPLAEIKINSREISGPARSELA 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2174 620 MobiDBLite consensus disorder prediction 434 450 - -
Ssu1g2174 620 MobiDBLite consensus disorder prediction 283 358 - -
Ssu1g2174 620 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 7 613 IPR033337 GO:0005874|GO:0008017
Ssu1g2174 620 MobiDBLite consensus disorder prediction 415 455 - -
Ssu1g2174 620 ProSiteProfiles HEAT repeat profile. 91 129 IPR021133 -
Ssu1g2174 620 MobiDBLite consensus disorder prediction 288 343 - -
Ssu1g2174 620 Coils Coil 456 476 - -
Ssu1g2174 620 Pfam HEAT repeat 212 239 IPR000357 GO:0005515
Ssu1g2174 620 Gene3D - 4 379 IPR011989 -
Ssu1g2174 620 SUPERFAMILY ARM repeat 9 375 IPR016024 -
Ssu1g2174 620 PANTHER TORTIFOLIA1-LIKE PROTEIN 3 7 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2174 Ssu-Chr1 61990912 61993985 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2174 - - gmx:100778310 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2174 1 61990912 61993985 Ssu1g2174 1 61990912 61993985 ECH
Ssu6g1322 6 21621811 21624485 Ssu1g2174 1 61990912 61993985 PCT