Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1311 ATGAAAAGAGGGAGAATAGGAAACACTTTGGTCGCATTGAGCAGGCAACGATCCATTCAGATTCTGATCGCTGTTGCACTGTTATACGTGCTCTTGTTCACCCTCGAAATCCCCTTCGTCTTCAGAACCGCTCAAGAACAACCGACTCAGACCCAGCGATTCGTTCACCGCCCAAACGGCGTCGTATCCGGTTTGATATTAAACGACGCCGCATTCGCTTCGGGGCTGTATCAATCCGCGTGCCGGGTGGGGAAGACCGTTTGGGAGGAACTAAAATCAGGGAACCCACGGGGCCTCATTTCGAAGCCCGAGAACCGATCCGGGCCGTGCCCGCGATCCGTCTCGGTGTCCGGGCCCGAGTTTTTGGGCCGCGGGAGTGTGATGGCGATTCCCTGTGGGCTCACGTTGGGGTCCCACATAACGGTGGTTGGGAAGCCGTTAAGCGCGCAACGGATGACGTGTCAGTTCGTGATGGAGTTGCAGGGGTTGAAGACGGTGGAGGGTGAAGAGCCACCTAGGGTGTTGCATTTCAATCCTAGGTTACAAGGGGATTGGAGTGGGAAGCCCGTGATTGAACTCAACACCTGTTACCGCATGCATTGGGGTTCCTCATTGCGCTGTGATGGTTGGAAATCCAGAGCTGGTGAAGATACTGTTGATGGGTTGGTGAAGTGTGAGAAGTGGATTGGGGGTGACGAAAACAAGGATGATAGGCATGCAAAGGAGTCCAAGGCAGCATGGTGGTTGAAGAGACTGATAGGTCGGACAAAACAAGTAACAGTTGATTGGCCATTTCCATTTTCTGAGAACAAGCTGTTTGTTCTTACTCTTAGTGCTGGGTTAGAGGGCTACCATGTTAATGTTGATGGGAGGCATGTCACCTCTTTTCCTTATCGCACTGGGTTTACTCTTGAGGATGCTACTGGTCTTACTTTGAGTGGGGACATTGATGTCCATTCTGTATTTGCTGCCTCTTTGCCTTCGGTGCATCCCAACGTTTCCCCGCAGCAGCATCTTGAATTTTCAACCAGATGGCGTGCCCCAAATCTTCCTCGCTCTGGCATGGAATTGCTCGTAGGGATCCTTTCGGCTGGAAACCATTTTGCTGAGCGGATGGCTGTGAGGAAGTCATGGATGCAGCATAGTTTTATCAAATCTTCTAAAGTGGTGGCTCGTTTCTTTGTAGCTCTGCACCCAAGGAAAGAAGTTAATGTAGAGTTGAAGAAGGAAGCAGAATATTTTGGTGATATTGTTATAGTTCCTTACATGGATAACTATGACCTTCTTGTGTTGAAAACAGTGGCCATATGTGAATATGGGGTTCGCACAGTTTCTGCGGAGTATATCATGAAGGGTGATGATGACACTTTTGTAGAAGTGGATGCTGTTATGAATGTAGCAAGGAATGTTCCAAATTCTATGAGCTTTTATATTGGGAACATTAACTACCGCCACAAACCCTTGCGCTGTGGTAAATGGGCTGTGACATATGAGGAGTGGCCAGAAGAGGAATACCCACCCTATGCCAATGGACCGGGTTATATTTTGTCTTCTGATATTGCACGCTACATTGTATCTGAATTTGAGATGCATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAGAGCAATTTAACAGAACGAAACCAGTACACTATTTGCATAGCTTAAAGTTCTGCCAGTATGGTTGTGTAGAAGGCTATTACATAGCCCATTACCAATCGCCTAGGCAGATGATGTGCCTGTGGGATAAATTGCAGAAGCAGACAAGGCCTCAATGCTGCAACATGAGATAA 1812 0.4785 MKRGRIGNTLVALSRQRSIQILIAVALLYVLLFTLEIPFVFRTAQEQPTQTQRFVHRPNGVVSGLILNDAAFASGLYQSACRVGKTVWEELKSGNPRGLISKPENRSGPCPRSVSVSGPEFLGRGSVMAIPCGLTLGSHITVVGKPLSAQRMTCQFVMELQGLKTVEGEEPPRVLHFNPRLQGDWSGKPVIELNTCYRMHWGSSLRCDGWKSRAGEDTVDGLVKCEKWIGGDENKDDRHAKESKAAWWLKRLIGRTKQVTVDWPFPFSENKLFVLTLSAGLEGYHVNVDGRHVTSFPYRTGFTLEDATGLTLSGDIDVHSVFAASLPSVHPNVSPQQHLEFSTRWRAPNLPRSGMELLVGILSAGNHFAERMAVRKSWMQHSFIKSSKVVARFFVALHPRKEVNVELKKEAEYFGDIVIVPYMDNYDLLVLKTVAICEYGVRTVSAEYIMKGDDDTFVEVDAVMNVARNVPNSMSFYIGNINYRHKPLRCGKWAVTYEEWPEEEYPPYANGPGYILSSDIARYIVSEFEMHKLRLFKMEDVSMGMWVEQFNRTKPVHYLHSLKFCQYGCVEGYYIAHYQSPRQMMCLWDKLQKQTRPQCCNMR 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1311 603 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 126 324 IPR001079 GO:0030246
Ssu6g1311 603 SMART galectin_3 124 324 IPR001079 GO:0030246
Ssu6g1311 603 CDD GLECT 129 322 IPR001079 GO:0030246
Ssu6g1311 603 Pfam Galactoside-binding lectin 127 322 IPR001079 GO:0030246
Ssu6g1311 603 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 67 603 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu6g1311 603 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 7 48 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu6g1311 603 SUPERFAMILY Concanavalin A-like lectins/glucanases 128 322 IPR013320 -
Ssu6g1311 603 Gene3D - 248 322 - -
Ssu6g1311 603 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 67 603 - -
Ssu6g1311 603 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 7 48 - -
Ssu6g1311 603 Gene3D - 352 599 - -
Ssu6g1311 603 SMART Gal_bind_lectin_2 130 323 IPR001079 GO:0030246
Ssu6g1311 603 Pfam Galactosyltransferase 370 550 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu6g1311 603 Gene3D - 125 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1311 Ssu-Chr6 21420900 21424268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1311 12 603 Glycosyltransferase AT1G74800 60.274 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1311 K20843 - gmx:100800292 1095.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2166 1 61637330 61640869 Ssu6g1311 6 21420900 21424268 ECH
Ssu6g1311 6 21420900 21424268 Ssu6g1311 6 21420900 21424268 ECH
Ssu6g1311 6 21420900 21424268 Ssu1g2166 1 61637330 61640869 PCT