Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2166 ATGCGGAATGGGTCACCCTCGGCCACTTCAACGAAATTTCAAttccattattattgttattattatttccctttcaaaatttcaagccCGTTGCCGTTTCTTTccttcattattttgtttttccacAAAGTCGGTCACCTCCTCCTCGTTCTCCCACCTCTTCCTCTGTACTCGGTGCGTGTTCTCTTCATAACTGGGGTGAGAGACAAATACCCTTGCGGGAATCTaaggcaaaaaataataaaaaaaagaagaagatcaCAGATGAAGCGAAAGCTAGAAACCTTGGTGTGGTTAACACGGAAACGATCGATTCAGTTTCTAAGCTGTGTGTCCCTCGTGTACCTCGTACTCGTAACACTCGAAATCCCGTTTGTTTTCAAAACCGACTTCACCGCCGTAACAACTCGTCCCCCGAGGCTTCTCAGCGAGGAGGACTCGCAGCAGAGAGATTCCCCAGCTCGCCCTTTGAAAACGGTTGCCAACGCGGACTCGCCGAGTCAACTCGCTCGCGGTAACGTCGTTTCCGCTTTGGTCTTAAACGACGCCGCGTTCGACCTCGACGGCGACGGCGGGTCGTTGGAGCTCTACAGGGAAGTAAAGCACGCGCGCGAGGTGGGACTGAGGCTCTGGGAAGACCTCGAATCTGGCGAGTCTCGGACCGTTATTTCGCGGCCAGAGAACCGGTCCGGTTCGTGTCCCGGCTCGGTGTCGCTGGCCGGTGCGGATGTCTTGGGCGTCGTGCCGCTGCCGTGCGGGCTCACATTGGGGTCCCACATAACGGTCGTCGGGAGGCCGTTGGCGGCGCGGCCGGAGTTCGAGCCGAAGATAACGGTGGTGACGGAGGACGAGCCGGTGATGGTGTCGCAGTTCGTGGTGGAGTTGCAGGGGCTGAAAACCGTGGACGGTGAAGAGCCTCCTAGGGTTTTTCACTTCAACCCGAGGTTGAAGGGGGATTGGAGTGGGAAACCAGTGATTGAACTCAACACGTGTTACCGCATGCAGTGGGGTTCCGCTCTCAGGTGTGACGGTTGGAAATCCGAGGCTGATGAAGATACCGTTGATAGGATGGTGAAGTGTGAGAAGTGGATTCGGGATGATGAGGATCACTTAGAGGAGTCTAAGGCAACGTGGTGGTTGAATAGATTGATAGGGCGCACGAAGAAAGTAACCGTTGACTGGCCGTTCCCGTTTTCTGAGGGGAAGCTATTTGTTCTTACTATTAGTGCTGGGTTGGAGGGGTATCATGTTAGTGTTGACGGGAGGCATGTGACCTCTTTTCCTTATCGCACTGGTTTTACTCTTGAGGATGCCACTGGGCTTTCTTTGAGTGGAGACATTGATGTCCACTCTGTATTTGCAGCATCTTTGCCTTCGTCGCATCCCAGTTTTGCCCCGCAGCGGCATCTTGAATTTTCCACCAGATGGCGTGCCCAGCCACTTCCTGACTCCGGTGTCGAGTTGTTCATCGGTGTCCTCTCAGCTGGAAACCATTTTGCTGAGCGGATGGCTGTGAGGAAGTCATGGATGCAACATAGGCTCTTCAAATCTGGAGTAGTGGTTACTCGTTTCTTTGTGGCACTGCATCCAAGACAAGAAATTAATGCAGAGTTGAAGAAGGAAGCAAAATTTTTTGGTGATATTGTTATAGTGCCTTACTTGGATAACTATGACCTTGTTGTGTTGAAAACAGTGGCCATATGTGAATATGGGGTTCACACAGTATCTGCTAAGTATATCATGAAAGGTGATGATGATACTTTTGTTAGAGTGGATGCCGTTATTGATGAAGCGAGGAAGGTTCCAGATGATACAAGCTTTTATATTGGGAACATAAATTACTACCACAAACCCTTGCGCTATGGGAAATGGGCAGTGACATATGAAgAGTGGCCAGAAGAGGAGTACCCACCCTATGCTAATGGGCCGGGTTATATATTGTCATCAGATATCTCACGCTATATTGTATCTGAATTTGAAACACATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAGAGCAATTTAACAGCTCAAAACCAGTACACTACTCGCATAGCTTAAAGTTCTGCCAGTTTGGTTGCATAGAAGACTATTACACGGCCCATTACCAGTCGCCTAGGCAGATGGTGTGCCTGTGGGATAAACTGCAAAGGCAGACAAGGCCTCAATGCTGCAATATGAGATGA 2205 0.4812 MRNGSPSATSTKFQFHYYCYYYFPFKISSPLPFLSFIILFFHKVGHLLLVLPPLPLYSVRVLFITGVRDKYPCGNLRQKIIKKRRRSQMKRKLETLVWLTRKRSIQFLSCVSLVYLVLVTLEIPFVFKTDFTAVTTRPPRLLSEEDSQQRDSPARPLKTVANADSPSQLARGNVVSALVLNDAAFDLDGDGGSLELYREVKHAREVGLRLWEDLESGESRTVISRPENRSGSCPGSVSLAGADVLGVVPLPCGLTLGSHITVVGRPLAARPEFEPKITVVTEDEPVMVSQFVVELQGLKTVDGEEPPRVFHFNPRLKGDWSGKPVIELNTCYRMQWGSALRCDGWKSEADEDTVDRMVKCEKWIRDDEDHLEESKATWWLNRLIGRTKKVTVDWPFPFSEGKLFVLTISAGLEGYHVSVDGRHVTSFPYRTGFTLEDATGLSLSGDIDVHSVFAASLPSSHPSFAPQRHLEFSTRWRAQPLPDSGVELFIGVLSAGNHFAERMAVRKSWMQHRLFKSGVVVTRFFVALHPRQEINAELKKEAKFFGDIVIVPYLDNYDLVVLKTVAICEYGVHTVSAKYIMKGDDDTFVRVDAVIDEARKVPDDTSFYIGNINYYHKPLRYGKWAVTYEEWPEEEYPPYANGPGYILSSDISRYIVSEFETHKLRLFKMEDVSMGMWVEQFNSSKPVHYSHSLKFCQFGCIEDYYTAHYQSPRQMVCLWDKLQRQTRPQCCNMR 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2166 734 CDD GLECT 247 453 IPR001079 GO:0030246
Ssu1g2166 734 Pfam Galactosyltransferase 501 681 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu1g2166 734 Gene3D - 243 361 - -
Ssu1g2166 734 SMART Gal_bind_lectin_2 250 454 IPR001079 GO:0030246
Ssu1g2166 734 Gene3D - 482 731 - -
Ssu1g2166 734 Pfam Galactoside-binding lectin 248 453 IPR001079 GO:0030246
Ssu1g2166 734 Gene3D - 367 453 - -
Ssu1g2166 734 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 94 734 - -
Ssu1g2166 734 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 246 455 IPR001079 GO:0030246
Ssu1g2166 734 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 94 734 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu1g2166 734 SUPERFAMILY Concanavalin A-like lectins/glucanases 247 453 IPR013320 -
Ssu1g2166 734 MobiDBLite consensus disorder prediction 140 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2166 Ssu-Chr1 61637330 61640869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2166 81 734 Glycosyltransferase AT1G74800 61.471 0.0 864
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2166 K20843 - gmx:100816777 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2166 1 61637330 61640869 Ssu6g1311 6 21420900 21424268 ECH
Ssu1g2166 1 61637330 61640869 Ssu1g2166 1 61637330 61640869 ECH
Ssu6g1311 6 21420900 21424268 Ssu1g2166 1 61637330 61640869 PCT