Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1308 ATGTGCTTTGAGGGGAAACCTGTTGCACTAAATGACACTCACACTTCTATCAACCCCCCTCATGGTTTGTGCCTTGAGAAAGTTGGGAATGGATCTTATCTCAATATGGTTGCTCATCCTGATGGCTCTAACCGCGCATTCTTCTCTAATCAAATGGGTAAGGTTTGGTTGGCAACAATTCCAGATGAGGGATCAGGAGGACAATTGGAGCTTGATGTATCAAGTCCCTTTGTTGATCTAACtgatcaagtttattttgatacTCAATTTGGAATGATGGGCATGGCATTTCATCCAAACTTTGCAAACAATGGTCGGTTCTTTGCTTCATTTAACTGTGATAAAGATAAGTGGTCGGGTTGTAATGGAGTATGTTCTTgtaattcaaatgttaattGTGATCCATCAAAGCTAGGAACTGATAATGGTGCTCAACCATGTCAATATCAAACTGTCATTGCAGAATATACTGCTAATGGTACTGCATCTCAGCCATCCTCGaCAAGTGCTAAATCAACAGAGGTGAGAAGGATATTTACCATGGGCCTCCCTTTTACATCTCAACATGGAGGCCAGATACTCTTTGGACCTAATGATGGGTATTTATACTTTATGATGGGAGATGGTGGAGGTTCAGGTGATCCATACAATTTTGCCCAAAACAAGAAATCATTGCTTGGAAAGATTATGAGGCTTGATATAAACAACATTCCAAGTGCGTCAGAAATTAGCAAACTTGGCCTTTGGGGTAGCTACTCCATTCCTAAGGATAATCCATTCAGTGAAGACAAAGATTTACAGCCTGAAATATGGGCCTTGGGACTAAGAAATCCATGGCGATGCAGTTTTGACTCAGAAAGACCTTCCTACTTTTTTTGTGCAGATGTTGGAGAGGATCTTTATGAGGAGGTGGATCTCATCACAAAGGGTGGAAACTATGGCTGGCGTGTTTATGAGGGACCCTATCTTTTCACTCCTACAGAGTCACCTGGAGGCAACACCTCCCTTAATTCCATAAATCCAATTCCACCAATACTGGGATACAACCATTCTGAAGTAAACAAGAATGAAGGATCCGCATCTATCACTGGTGGATATGTCTATCGATCTATGACTGATCCTTGCATGTATGGAAGGTACTTGTATGGTGATCTTTATGCAGGTGCAATATGGGCAGCCATTGAAGAGCCAGAAAATAGTGGAAATTTCACCACTAGCAAAATACCTTTCAGTTGTGCACATGATTCTCCCATCCAATGTGACTCTGTACCTGGAAGCTCCCTTCCAGCTCTGGGCTACATCTATTCATTTGGTGGGGACAACAAGAAAGATGTTTATATTCTTGCAAGCACCGGTGTTTGTCGAGTTGTTCGTCCAAGTCGCTGCAGTTACACTTGCTCACTGGAAAAGGCAACAACCACTCCTCCTTCCCCTTCTCCATCTCATGCAAGCTGTTGGAGTAACTTGTCTGGATATCTGTTTCTgcatctttcttcctttttgttGCTTTTGATAAGTTTTATGTAG 1527 0.4093 MCFEGKPVALNDTHTSINPPHGLCLEKVGNGSYLNMVAHPDGSNRAFFSNQMGKVWLATIPDEGSGGQLELDVSSPFVDLTDQVYFDTQFGMMGMAFHPNFANNGRFFASFNCDKDKWSGCNGVCSCNSNVNCDPSKLGTDNGAQPCQYQTVIAEYTANGTASQPSSTSAKSTEVRRIFTMGLPFTSQHGGQILFGPNDGYLYFMMGDGGGSGDPYNFAQNKKSLLGKIMRLDINNIPSASEISKLGLWGSYSIPKDNPFSEDKDLQPEIWALGLRNPWRCSFDSERPSYFFCADVGEDLYEEVDLITKGGNYGWRVYEGPYLFTPTESPGGNTSLNSINPIPPILGYNHSEVNKNEGSASITGGYVYRSMTDPCMYGRYLYGDLYAGAIWAAIEEPENSGNFTTSKIPFSCAHDSPIQCDSVPGSSLPALGYIYSFGGDNKKDVYILASTGVCRVVRPSRCSYTCSLEKATTTPPSPSPSHASCWSNLSGYLFLHLSSFLLLLISFM 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1308 508 PANTHER HIPL1 PROTEIN-LIKE 1 507 - -
Ssu6g1308 508 PANTHER HEDGEHOG-INTERACTING PROTEIN 1 507 - -
Ssu6g1308 508 Pfam Glucose / Sorbosone dehydrogenase 38 319 IPR012938 -
Ssu6g1308 508 SUPERFAMILY Soluble quinoprotein glucose dehydrogenase 18 327 IPR011041 -
Ssu6g1308 508 Gene3D - 25 428 IPR011042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1308 Ssu-Chr6 21362598 21365379 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1308 - - gmx:100778890 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1308 6 21362598 21365379 Ssu1g2164 1 61601561 61605603 PCT