Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1281 atgtactttAATGATACATGTTATTTCGGTGCCCTTATTGGACGGGTGGCAAATAGGATTGGAGGAGCTAAATTCACTTTGGACGGCAAAACCTACAAATTGCCCGCTAATGATCACGGGAACACACTACAtgGTGGCACAAGAGGCTTCAGTGATGTTGTATGGTCAGTGGAATCCCACAAGGAACACAGTCATGTAACATTTACCTACGACAGTTTTGAAAATGAGCAAGGCTTTCCTGGAAAACTCAAGGTCTCTGTGACTTACATGCTCATTGGAACACACGAATTGGGTGTGAAAATGATTGCCAAGCCAGTGACCAAAGCCACACCAGTGAATCTAGCGCAGCATACTTACTGGAACCTTAGGGGCCACAACAATGGTGACATTCTTTCTCACATTGTTCAGATCTTAGGCTCATACATCACACCAGTGGACAAGCTTCTCATCCCCACTGGCGAAATCATATCTGTTAAGGGCACCCCATATGATTTCCTTGAACCAAAAAAGGTTGGAAGCCAGATTCATGACCTTCCTGGTCTATATGACATGAACTATGTGCTGGACAAAACTTTCCAAAAGCACTTAAGTAAGGCTGTTGAGGTGAGAGACCCTGTCTCTGGGAGGAAAATGGAGCTGTGGTCAAACCAACTTGGTCTGCAGTTCTATACTAGTGGCCAGTTGAATGCTACCAAAGGCAAGGATGGGGCCATATACCATAAGTATGCTGGCATTGCCTTGGAGACACAGGGTTTCCCAGATTCTGTGAATTATCCTTACTTTCCATCACAGATTGTGAAGCCTGGGGAGATTTACGAGCACAACATGCTTTACAAATTCACAGCTAGCTAG 852 0.4437 MYFNDTCYFGALIGRVANRIGGAKFTLDGKTYKLPANDHGNTLHGGTRGFSDVVWSVESHKEHSHVTFTYDSFENEQGFPGKLKVSVTYMLIGTHELGVKMIAKPVTKATPVNLAQHTYWNLRGHNNGDILSHIVQILGSYITPVDKLLIPTGEIISVKGTPYDFLEPKKVGSQIHDLPGLYDMNYVLDKTFQKHLSKAVEVRDPVSGRKMELWSNQLGLQFYTSGQLNATKGKDGAIYHKYAGIALETQGFPDSVNYPYFPSQIVKPGEIYEHNMLYKFTAS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1281 283 PANTHER ALDOSE 1-EPIMERASE 2 283 - -
Ssu6g1281 283 CDD galactose_mutarotase_like 2 280 - -
Ssu6g1281 283 PANTHER ALDOSE-1-EPIMERASE 2 283 - -
Ssu6g1281 283 SUPERFAMILY Galactose mutarotase-like 2 280 IPR011013 GO:0003824|GO:0005975|GO:0030246
Ssu6g1281 283 Pfam Aldose 1-epimerase 2 279 IPR008183 GO:0005975|GO:0016853
Ssu6g1281 283 PIRSF GALM 1 283 IPR015443 GO:0016853|GO:0019318
Ssu6g1281 283 Gene3D - 1 282 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1281 Ssu-Chr6 20785620 20788002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1281 2 282 Miscellaneous Gene Families AT3G47800 64.057 4.94e-134 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1281 K01785 - gmx:100806956 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2137 1 60908208 60909757 Ssu6g1281 6 20785620 20788002 ECH
Ssu6g1281 6 20785620 20788002 Ssu6g1281 6 20785620 20788002 ECH