Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2137 ATGTTCAAGGTGTACCTAGTTTCCTCTTTTCTCCTCGGGCTTCTGCTCCTTGCTCAAGCACATGAAAATGATAAGAAGATTGGGTTTTATCAACTCAAGAGAGGAAATATGGAGctaaatttgacaaattatgGTGCAACAATTGTCTCCGTCATAGTCCCTGATAAACATGGGAATTTAGCTGACATTACGCTTGGCTACGATGACATTCAGCAATACGAGAATGATACAGTTTACTTCGGAGCCCTTATTGGACGTGTGGCAAACAGAATTGGACACGCTCGGTTCACATTGGATGGCCATACCTATAAATTGCCTGCTAATGATCATGGGAACACACTCCAcgGTGGTACCATAAGGTTCAGTGACGTTATATGGACAGTAGAAAGTCACAAGGAAGATAGTTATATAACATTTACCTATGACAGTCATGATAATGAACAAGGCTTCCCTGGAAGACTTGAAGTAAGTGTGACCTACATGTTCATTGGCACAAACAAATATGGTGTGAAAATGATTGCCAGGCCAGTAGACAAAGCAACACCAGTGAACCTAGCACAGCACACATACTGGAATTTAAGGGGCCACAACAGTGGTGACATTTTGTCACACGAGGTTCAGATTTTTGGCTCACAGATCACACCGGTGGACAAAAAACTCATCCCCACTGGTAAATTCGCATCTGTGAAGGGCACCCCATATGATTTCCTTGAACCAAGGGAAGTAGGTAGCCGAATCCATGACCTTCCGGCCTATATGACATGA 765 0.4235 MFKVYLVSSFLLGLLLLAQAHENDKKIGFYQLKRGNMELNLTNYGATIVSVIVPDKHGNLADITLGYDDIQQYENDTVYFGALIGRVANRIGHARFTLDGHTYKLPANDHGNTLHGGTIRFSDVIWTVESHKEDSYITFTYDSHDNEQGFPGRLEVSVTYMFIGTNKYGVKMIARPVDKATPVNLAQHTYWNLRGHNSGDILSHEVQIFGSQITPVDKKLIPTGKFASVKGTPYDFLEPREVGSRIHDLPAYMT 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2137 254 PANTHER ALDOSE 1-EPIMERASE 3 251 - -
Ssu1g2137 254 CDD galactose_mutarotase_like 30 250 - -
Ssu1g2137 254 PANTHER ALDOSE-1-EPIMERASE 3 251 - -
Ssu1g2137 254 Pfam Aldose 1-epimerase 30 246 IPR008183 GO:0005975|GO:0016853
Ssu1g2137 254 Gene3D - 18 253 IPR014718 GO:0030246
Ssu1g2137 254 SUPERFAMILY Galactose mutarotase-like 21 248 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2137 Ssu-Chr1 60908208 60909757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2137 4 251 Miscellaneous Gene Families AT3G47800 56.855 4.65e-105 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2137 K01785 - gmx:102659620 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2137 1 60908208 60909757 Ssu6g1281 6 20785620 20788002 ECH
Ssu1g2137 1 60908208 60909757 Ssu1g2137 1 60908208 60909757 ECH