Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1279 ATGGAGCTCTTAAACAATAAGCGCCCACCGGAAGGAGATGAAAAACAAGCTATGCCGAGAAAGTTGTCAAAAATTGCAAATGATCCCAACGAAGAGGATAAGCAGATGGATAtggtttttcttttcccttctaAGAAGGACCAAGGGAATGACCAAAACCATGCAATTGTGCTGCCTAACTCAAATTTGCTTATTCACCAACTTGGCCGGGATATCTCAATCAGTTGTCTCCTACAATTGTCAAGGTCTGATTATGGCTCAATTGCCTCATTGAACCAAAGTTTTCGATCTCTTATTCGGAGTGGAGAACTGTATCAGCTCAGGCGAAAAATGGGTATTGCAGAATATTGGGTTTACTTCTCTTGTAATATCCTTGAATGGGAGGCATTTGATCCAAATCGCGGTCGTTGGATGCATTTGCCTAGAATGACTTCTAATGAATGCTTTATGTGTTCGGATAAGGAGTCGTTGGCTGTTGGTACAGAGCTTCTTGTTTTTGGAAAGGAAATAACGGCTCCTGTCGTTTATGGATATAACATTTTGACGAACACCTGGTCATTTGGTACAGAAATGAATATTCCTAGATGCTTGTTTGGATCTGCCAGCCTTAGAGAAATTGCTATAGTGGCTGGTGGTTGTGATCCACTTGGTAGGATCTTGAGCGTAGCTGAGCTTTATAATTCAGATACCAGAACGTGGGAGACTCTTCCAAACATGAATAAAGCAAGGAAAATGTGTTCTGGTGTATTTATGGATGGTAAATTTTATGTCCTTGGTGGGATTGGAGAAGACCACACCAAGCAGCTAACAAGTGGCGAGGAGTTTGAtttaaagacaagaaaatggcgTGAAATACCCGACATGTTCCTTGCTCGAAGTGGTGAAAGGGTGACTCAAACACCAGCCTCTGCTGAGGCACCTCCTTTGGTTGCAGTTGTAAATAATGTATTGTATACTGCAGATTATGCAAAGCAAGAAGTAAAGAGATATGTCAAAGAGAGGAACAAATGGGTCATCATTGGAAGCCTTCCTAAAGGACCAACCTCTATAAATGGTTGGGGAATAGCATTTCGAGCATGTGGAGATCGGCTAATTGTTATTGGTGGGCCTAATTCTAATGGTGGAGGGGTGATTGAAGTTAATTCTTGGGTTCCAGATGAAGGTGCACCAATGTGGAACTTGCTTGCCAAAAAGCAATCAGGGAGCTTTGTGTATAATTGCACAGTGATGGGATGTTGA 1239 0.4084 MELLNNKRPPEGDEKQAMPRKLSKIANDPNEEDKQMDMVFLFPSKKDQGNDQNHAIVLPNSNLLIHQLGRDISISCLLQLSRSDYGSIASLNQSFRSLIRSGELYQLRRKMGIAEYWVYFSCNILEWEAFDPNRGRWMHLPRMTSNECFMCSDKESLAVGTELLVFGKEITAPVVYGYNILTNTWSFGTEMNIPRCLFGSASLREIAIVAGGCDPLGRILSVAELYNSDTRTWETLPNMNKARKMCSGVFMDGKFYVLGGIGEDHTKQLTSGEEFDLKTRKWREIPDMFLARSGERVTQTPASAEAPPLVAVVNNVLYTADYAKQEVKRYVKERNKWVIIGSLPKGPTSINGWGIAFRACGDRLIVIGGPNSNGGGVIEVNSWVPDEGAPMWNLLAKKQSGSFVYNCTVMGC 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1279 412 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 22 412 - -
Ssu6g1279 412 MobiDBLite consensus disorder prediction 1 32 - -
Ssu6g1279 412 Pfam Kelch motif 242 288 IPR006652 GO:0005515
Ssu6g1279 412 Pfam Kelch motif 194 240 IPR006652 GO:0005515
Ssu6g1279 412 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 22 412 - -
Ssu6g1279 412 SUPERFAMILY Kelch motif 124 409 IPR015915 GO:0005515
Ssu6g1279 412 Gene3D - 107 409 IPR015915 GO:0005515
Ssu6g1279 412 SMART kelc_smart 254 302 IPR006652 GO:0005515
Ssu6g1279 412 SMART kelc_smart 206 253 IPR006652 GO:0005515
Ssu6g1279 412 SMART kelc_smart 162 205 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1279 Ssu-Chr6 20750183 20751421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1279 65 306 EF-hand Containing Proteins AT4G39560 26.423 1.12e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1279 - - gmx:100788507 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1618 2 64555425 64557011 Ssu6g1279 6 20750183 20751421 PCT