Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1618 ATGTTGGACGGTCGGTCCTGCGTTGTTCCAAGGTTGTTTTCCAGCACTTGCCAGGCAGAGAACGATTGGTCTTACATGAAGTGCCTGCTGGGGTTGGACATCAAGAATGGCAAGCGCCCTGTGGAgattgatgatgttgaggatgagTCCCAACCGAGGAAGTGTACTAAGAAGTTGGACTCTTGCCATAGAGTTGAAACGGCTCAAATTTCGTTTCAACGCCAATCTATTGAGGCCAAGGATTCTGTTGTTCCCCCAATGGATCAGGAGATCATTGAGCCATTGAGTGTTTGTCAAGGAGTTGGAGAAGATGGAGCTTTGACTGACTGGATTTTGGGCGAGGAAGAACAGAAGGATGATGGTGATTTGATGGATTTTGGTGGCCATCAATCTGATAAACAGCAGCAGGTTCAGCCTGGGGATTCATCAGATTTCGGTGTTGGGCTATCTGATGAAGAGCAGTTGCAGCATGATGAGAATTCATTGAATACGAGTGAGCAGCAGCAGCACCATGGTGGGGATTCTTCAGATTCTGGATCTCTCTTGCCACGCATGAACCGTGACAGCTCAATCGCCTGTCTCAGCCGCTGCTCAAGGTCGGATTACGGTTCTCTTGCCTCGCTGAATAGGAGCTTCCGGAACATAATCCGAAGTGGTGAGCTCTATACATGGAGGAGGCTGAATGGTATCATGGAGCACTGGATTTATTTTTCCTGCGCCCTCCTCGAATGGGAGGCCTATGATCCAATTCGCCAGCGGTGGATGCATTTGCCAACGATGGCTTCCAATGATTGCTTCATCTTTTCAGATAAGGAATCTTTAGCTGTAGGTACTGAGCTTCTTGTGTTTGGGAGGGAGCTGAGGTCCCATGTCATGTACAGATACAGTCTCTTGACAAACTCATGGACATCTGGACTGAGGATGAATGCTCCAAAATGCTTGTTTGGCTCTGCTAGCCTTGGGGAGATTGCAATATTAGCTGGTGGGTGTGATTTAGAGGGACACATCCTTGACTCTGCTGAGCTGTATAATTCCGAGACTCAAACATGGGAAATGCTCCCAAGTATGAAAAAACCCAGGAAGATGTGTTCTGGGGTATTTATGGATGGAAAGTTTTATGTTATAGGGGGAATTGGGGGGAGTGATAACACGCTCCTCACGTGTGGAGAGGAGTACGATTTACAGACTAGGACATGGACAGAGATTCCTAACATGTCACCCGGACGTAGTAATCAGGGGCTTGAGTTGCCTGCAGCAGCTGAGGCACCACCTCTGGTTGCTGTTGTAAATGATGAACTGTATGCTGCTGATTACGCAAACATGGAGGTTAAGAAGTATGACAAGGACATGAAATCGTGGTCTACCATTGGGAGACTGCCCGAACGAGCAGTGTCGATGAATGGCTGGGGCCTTGCATTCAGGGCATGCGGAAataggcttattgtcattggtGGACCTAGGGCTCATGGGGAGGGTTTTATTGAACTCAATTCATGGGTGCCTAGTGAAGGACCTCCACAGTGGGATCTACTTGCTAGAAAACGCTCGAGCAACTTTGTCTATAATTGTGCTGTGATGGGATGCTGA 1587 0.4707 MLDGRSCVVPRLFSSTCQAENDWSYMKCLLGLDIKNGKRPVEIDDVEDESQPRKCTKKLDSCHRVETAQISFQRQSIEAKDSVVPPMDQEIIEPLSVCQGVGEDGALTDWILGEEEQKDDGDLMDFGGHQSDKQQQVQPGDSSDFGVGLSDEEQLQHDENSLNTSEQQQHHGGDSSDSGSLLPRMNRDSSIACLSRCSRSDYGSLASLNRSFRNIIRSGELYTWRRLNGIMEHWIYFSCALLEWEAYDPIRQRWMHLPTMASNDCFIFSDKESLAVGTELLVFGRELRSHVMYRYSLLTNSWTSGLRMNAPKCLFGSASLGEIAILAGGCDLEGHILDSAELYNSETQTWEMLPSMKKPRKMCSGVFMDGKFYVIGGIGGSDNTLLTCGEEYDLQTRTWTEIPNMSPGRSNQGLELPAAAEAPPLVAVVNDELYAADYANMEVKKYDKDMKSWSTIGRLPERAVSMNGWGLAFRACGNRLIVIGGPRAHGEGFIELNSWVPSEGPPQWDLLARKRSSNFVYNCAVMGC 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1618 528 MobiDBLite consensus disorder prediction 129 143 - -
Ssu2g1618 528 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 1 528 - -
Ssu2g1618 528 MobiDBLite consensus disorder prediction 160 182 - -
Ssu2g1618 528 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 1 528 - -
Ssu2g1618 528 Gene3D - 237 503 IPR015915 GO:0005515
Ssu2g1618 528 Pfam Kelch motif 312 356 IPR006652 GO:0005515
Ssu2g1618 528 Pfam Kelch motif 359 406 IPR006652 GO:0005515
Ssu2g1618 528 MobiDBLite consensus disorder prediction 119 182 - -
Ssu2g1618 528 SUPERFAMILY Kelch motif 241 524 IPR015915 GO:0005515
Ssu2g1618 528 SMART kelc_smart 371 419 IPR006652 GO:0005515
Ssu2g1618 528 SMART kelc_smart 279 322 IPR006652 GO:0005515
Ssu2g1618 528 SMART kelc_smart 323 370 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1618 Ssu-Chr2 64555425 64557011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1618 188 404 EF-hand Containing Proteins AT4G39560 26.267 4.16e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1618 - - gmx:100818865 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g1618 2 64555425 64557011 Ssu2g1618 2 64555425 64557011 ECH
Ssu2g1618 2 64555425 64557011 Ssu6g1279 6 20750183 20751421 PCT