Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1275 ATGGGATCTGGGGCCGGGAATTTCCTCAAGGTGCTTCTCAAAAATTTCGATGTCCTTGCTGGGCCTGTCATTAGTCTTGTTTATCCTCTATATGCTTCAATTAGGGCAATTGAGAGCAAGTCTCCTATTGATGATCAGCAGTGGCTTACTTACTGGGTTCTCTATTCCTTGATAACCCTCTTTGAACTCACTTTTGCCAAAGTCCTTGAAtgGATTCCGATATGGCCTTATGCAAAGCTGATTATAACCTGCTGGTTGGTCCTTCCTTACTTTAGTGGTGCTGCTTATGTTTATGAGCATTATGTTAGACCTTTCTATGTCAATCCTCAGACCATTAACATCTGGTACGTTCCAAGGAAAAAGGACACCTTTGGTAAGCCAGATGATATTCTAACTGCTGCAGAGAAGTACATCCAAGAGAATGGAACAGAAGCATTTGAGAGTCTGATCAATAGGGCTGATAAATCAAGACGGGGTGGCGGTTATTATACAACGTATGATGAGACTTATTGA 513 0.4172 MGSGAGNFLKVLLKNFDVLAGPVISLVYPLYASIRAIESKSPIDDQQWLTYWVLYSLITLFELTFAKVLEWIPIWPYAKLIITCWLVLPYFSGAAYVYEHYVRPFYVNPQTINIWYVPRKKDTFGKPDDILTAAEKYIQENGTEAFESLINRADKSRRGGGYYTTYDETY 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1275 170 Pfam TB2/DP1, HVA22 family 29 105 IPR004345 -
Ssu6g1275 170 PANTHER HVA22-LIKE PROTEIN 4 161 - -
Ssu6g1275 170 PANTHER HVA22-LIKE PROTEINS 4 161 IPR004345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1275 Ssu-Chr6 20707726 20709402 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1275 K17279 - gmx:100306331 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2124 1 60529375 60531715 Ssu6g1275 6 20707726 20709402 ECH
Ssu6g1275 6 20707726 20709402 Ssu6g1275 6 20707726 20709402 ECH
Ssu2g1614 2 64436511 64439405 Ssu6g1275 6 20707726 20709402 PCT