Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1270 ATGGTGGGAGACAGGACGAAGAAGTTGAAAGTTGCAGACAATTTGGAGGATAATATCGACGGAGAACTCGTCCTCACCATCGAGAAGTTGCAAGAGGTCCAAGACGAGCTAGAAAAGATCAATGAGGAGGCAAGTGATAAGGTCCTCGAAATTGAGCAGAAGTACAATGAGATAAGGAAGCCAGTTTACGATAAGCGAAATGAGATCGTCAAATCTATTCCTGATTTCTGGTTGACTgctTTTATGAGTCATCCTGCCCTGTGTGAGCTTCTGAACCTTGAGGATCAAAAGATATTTAAGTATTTGGGTTCTCTTGAGGTTGAAGATAATAAAGATGTCAAATCAGGCTACACAATCACCTTTAATTTCAGTCCCAATCCCTATTTTGAGAACACAAAGCTTACGAAGACTTTTACCTTCCTTGAAGAAGGAACAACAAAGATAACTGCTACCCCCATAAAATGGAAAGAGGGCAAGGGAATACCTAATGGAGTCAATCATGACAAGAAAGGGAACAAGCGGGCTCCAATTGATATCAGTTTCTTTAGTTGGTTTAGTGACTGTGAGCAGAAAGGTGATATGGATGACATTCATGATGAGGTTGCAGAATTAATCAAGGACGATTTATGGCCAAATCCACTCACTTATTTCAACAATGAGGAGCCTGATGAAGAGGATGTTGATGATGAAGCTGATGACGAGGAAAAGGAGGAGGATGATCTGAAGATGATGACCAAGAGgatgatgatgacgatgatGGTGAGGGTGAGGATGGCAATGACAGTTGAAAAATGCATTATGGTGGTGTTTCCTGTTTATTTTTCTCTGGTTGAGTATGTAAGTAGGCTTTTGGGCAGGGTGACCGTTGCCATTTTTTTCGAGGTGTTAGACTCATGTCAGCAGGTGGAGCTATCTAAAATTAGTGGTTCTCTGACCATAATCTATTAA 948 0.403 MVGDRTKKLKVADNLEDNIDGELVLTIEKLQEVQDELEKINEEASDKVLEIEQKYNEIRKPVYDKRNEIVKSIPDFWLTAFMSHPALCELLNLEDQKIFKYLGSLEVEDNKDVKSGYTITFNFSPNPYFENTKLTKTFTFLEEGTTKITATPIKWKEGKGIPNGVNHDKKGNKRAPIDISFFSWFSDCEQKGDMDDIHDEVAELIKDDLWPNPLTYFNNEEPDEEDVDDEADDEEKEEDDLKMMTKRMMMTMMVRVRMAMTVEKCIMVVFPVYFSLVEYVSRLLGRVTVAIFFEVLDSCQQVELSKISGSLTIIY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1270 315 PANTHER NUCLEOSOME ASSEMBLY PROTEIN (NAP)-RELATED 2 239 - -
Ssu6g1270 315 Coils Coil 23 57 - -
Ssu6g1270 315 MobiDBLite consensus disorder prediction 217 239 - -
Ssu6g1270 315 Gene3D - 3 73 - -
Ssu6g1270 315 PANTHER TESTIS-SPECIFIC Y-ENCODED PROTEIN 2 239 IPR002164 GO:0005634|GO:0006334
Ssu6g1270 315 Gene3D Nucleosome assembly protein 74 221 - -
Ssu6g1270 315 SUPERFAMILY NAP-like 13 218 IPR037231 -
Ssu6g1270 315 MobiDBLite consensus disorder prediction 219 238 - -
Ssu6g1270 315 Pfam Nucleosome assembly protein (NAP) 70 219 IPR002164 GO:0005634|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1270 Ssu-Chr6 20626038 20629831 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1270 K11290 - gmx:100810307 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2117 1 60457097 60459925 Ssu6g1270 6 20626038 20629831 ECH
Ssu6g1270 6 20626038 20629831 Ssu6g1270 6 20626038 20629831 ECH
Ssu1g2117 1 60457097 60459925 Ssu6g1270 6 20626038 20629831 PCT