Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2117 atgGTGGCCGACAGGAGCAAGAAGTTGAAAGTTTCCGACAAGGGCGAGAACCTCGACGACATCGACGGAGAACTCGTCCTCTCCATCGAGAAGTTGCAAGAGATCCAAGACGAGCTCGAAAAGATCAATGAGGAAGCCAGCGACAAAGTCCTGGAAATAGAGCAGAAATACAATGAGATACGGAAGCCTGTTTATGATAAGCGGAATGATATTATCAAGTCTATTCCTGATTTCTGGTTAACTGCTTTTTTGAGTCATCCTGCTCTTGGTGATCTTTTGAACGAGGAAGATCAGAAGATATTTAAGTATTTGAGTTCTCTTGAGGTTGAAGATTTTAAAGATGTCAAATCAGGCTACTCAATCACTTTTAATTTCAATACCAATCCCTATTTTGAGGATACAAAACTTGTAAAGACTTATACTTTCCTTGAGGAAGGAACAACAAAGGTTACTGCTACACCCATAAAATGGAAAGAGGGCAAGGGCATACCCAATGGAGTTAATCATGAGAAAAAAGGGAACAAGCGGGCTCCTGCTGATGTCAGCTTCTTTAGTTGGTTTAGTGACACCGAGCAGAAAGATGATATGGATGACATTCATGATGAGGTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCACTTACTTATTTCAACAATGAAGAACCTGACGAAGAGGAGGGTGATGAGGATGAAGCTGATGATGAGGTAATCAATGtacaattttcttctttttag 741 0.3968 MVADRSKKLKVSDKGENLDDIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEIRKPVYDKRNDIIKSIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYSITFNFNTNPYFEDTKLVKTYTFLEEGTTKVTATPIKWKEGKGIPNGVNHEKKGNKRAPADVSFFSWFSDTEQKDDMDDIHDEVAELIKDDLWPNPLTYFNNEEPDEEEGDEDEADDEVINVQFSSF 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2117 246 Pfam Nucleosome assembly protein (NAP) 73 221 IPR002164 GO:0005634|GO:0006334
Ssu1g2117 246 Pfam Nucleosome assembly protein (NAP) 29 73 IPR002164 GO:0005634|GO:0006334
Ssu1g2117 246 SUPERFAMILY NAP-like 8 220 IPR037231 -
Ssu1g2117 246 Coils Coil 25 59 - -
Ssu1g2117 246 PANTHER NUCLEOSOME ASSEMBLY PROTEIN (NAP)-RELATED 2 231 - -
Ssu1g2117 246 PANTHER TESTIS-SPECIFIC Y-ENCODED PROTEIN 2 231 IPR002164 GO:0005634|GO:0006334
Ssu1g2117 246 Gene3D Nucleosome assembly protein 76 223 - -
Ssu1g2117 246 Gene3D - 1 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2117 Ssu-Chr1 60457097 60459925 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2117 K11290 - gmx:100808081 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2117 1 60457097 60459925 Ssu6g1270 6 20626038 20629831 ECH
Ssu1g2117 1 60457097 60459925 Ssu1g2117 1 60457097 60459925 ECH
Ssu1g2117 1 60457097 60459925 Ssu6g1270 6 20626038 20629831 PCT