Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1245 ATGTTGATGAAAGGTTTGGTACCTCCAAGCGGCAAAAGAGGTGTTCAAGAGCACTTGCTTTCCCTATTGCAGAACTGCAACAGCGTAAGCACCCTCATTCAAATTCACAGCCAAGTCGTTCTCAACGGCCTCTCTCACAAGAACATCATCATCGCCAACCTTCTCTCCTTCTACATAGCCTCTGGCCATTTCCAACATGCCCACCACCTTTTCGCCAAAATGAACAACCCAACTACCACCGTTTGGAACCACGTCATCAGAGGCTATGCCCGCAGCCAAATGCCTTGGAAATCAGTGGAGTGTTACAACCACATGGTGTCTGCTGAGGTCGAGCCTGATGGGTTCACGTACTCGTCTCTCTTGAGTGCATGTGCGCGAGGTGGGTTGGTAAAAGAAGGGGAACAGGTGCATGGCACGGTTCTGGTAAAAGGGCATTGCTCCAGTGTCTTCGTGGACACGAATTTAATCAATTTCTATGCGAGGGGCGGCGGTGTTGAGCGAGCGTGCCATGTCTTTGATGATATGAAGCAGAGAAGTGTTGTTAGCTGGAATTCTATACTTGCTGGGTATGTTAGGTGTGGCGATTTTGATGGAGCTGGAAGGGTTTTTGACGCGATGCCATGTAGGAATGTTGTGTCTTGGACCACCATGGTTGCCGGGTGCGCTCAGAATGGGAAGTGCAGGcaggctttgttgttgtttggtGAGATGAGGAGAGCACGTGTGGAATTGGATCAAGTGGCATTGGTGGCGGCTTTGTCAGCGTGCGCTGAATTAGGGGATCTGAAGTTGGGAAGATGGATCCATTGGTTTGTTCAACAGCGGACTGCTTGTATCATTTTGCCACAAGTGTTCCTTCTCACATGCTGTGTCTTTGAAAACGATGCAGAATTCTTGCTGGCATGA 906 0.4845 MLMKGLVPPSGKRGVQEHLLSLLQNCNSVSTLIQIHSQVVLNGLSHKNIIIANLLSFYIASGHFQHAHHLFAKMNNPTTTVWNHVIRGYARSQMPWKSVECYNHMVSAEVEPDGFTYSSLLSACARGGLVKEGEQVHGTVLVKGHCSSVFVDTNLINFYARGGGVERACHVFDDMKQRSVVSWNSILAGYVRCGDFDGAGRVFDAMPCRNVVSWTTMVAGCAQNGKCRQALLLFGEMRRARVELDQVALVAALSACAELGDLKLGRWIHWFVQQRTACIILPQVFLLTCCVFENDAEFLLA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1245 301 Gene3D Tetratricopeptide repeat domain 10 148 IPR011990 GO:0005515
Ssu6g1245 301 PANTHER OS09G0411600 PROTEIN 10 276 - -
Ssu6g1245 301 Pfam PPR repeat family 77 126 IPR002885 -
Ssu6g1245 301 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 10 276 - -
Ssu6g1245 301 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Ssu6g1245 301 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 209 IPR002885 -
Ssu6g1245 301 TIGRFAM PPR: pentatricopeptide repeat domain 181 211 IPR002885 -
Ssu6g1245 301 TIGRFAM PPR: pentatricopeptide repeat domain 81 113 IPR002885 -
Ssu6g1245 301 TIGRFAM PPR: pentatricopeptide repeat domain 212 245 IPR002885 -
Ssu6g1245 301 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Ssu6g1245 301 Gene3D Tetratricopeptide repeat domain 149 266 IPR011990 GO:0005515
Ssu6g1245 301 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Ssu6g1245 301 Pfam PPR repeat 212 241 IPR002885 -
Ssu6g1245 301 Pfam PPR repeat 153 179 IPR002885 -
Ssu6g1245 301 Pfam PPR repeat 181 210 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1245 Ssu-Chr6 20252697 20254589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1245 98 274 Glycoside Hydrolase AT3G49170 25.967 4.57e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1245 - - aip:107610465 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0444 3 10192301 10193854 Ssu6g1245 6 20252697 20254589 ECH
Ssu6g1245 6 20252697 20254589 Ssu6g1245 6 20252697 20254589 ECH