Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0444 ATGATCAGAAAAAGAGGCACCACCACCGTTACCAACGTTGGAGCCCTCAAACAGATTCGCGCTTTAATGATCGTTAACGGTTTCACTTCCAATGTTGGATTCCTCAGAAAACTCGTCCTCGCCGCCGCCATGTCAATGGTGGGTCCCGCTGCCACCACTGCCGTGACACAATACGCACTCCAAATGTTCGCTCAAATTCCCCAACCAGACACCTTCATGTGGAACACCATGATCAGAGGCTCTTGTCAGTGCCATGATCCTGTGCATGCGGTTGCACTGTATGCCCAGATGGACCAGCGTTTCGTGAAGCCTGACAACTTCACCTTCCCCTTTGTTCTAAAGGCTTGCACCAAGCTCTTATGGATCAATACTGGTTCTGCGGTTCATGGCCGGGTTTTGAGGCTTGGGTTCGGTTCAAACGTAGTTGTGAGGAACACCCTTTTGGTTTTTCATGCTAAATGTGGTGACTTGAAGGTTGCAACTGAGATTTTTGGTGATTCGGATAAGGGGGATGTGGTTGCTTGGTCTGCACTCATTGCTGGGTATGCCCAAAGAGGGGATTTGAGTGTTGCGCGGAAACTGTTTGATGAAATGCCGAAGAGAGATTTGGTGTCATGGAATGTGATGATCACAGGGTACACAAAGCACGGGGAGATGGAGAGTGCTAGGAGGCTTTTTGATGAGGCTCCTGTGAGGGATGTTGTTAGCTGGAATGCGGTGATTGGTGGTTATGTGCTTCGCGGTTTGAACCGGGAAGCATTGGAGTTGTTTGATGAGATGTGTGGAGTTGGGGAGTGCCCTGATGAGGTGACAATGTTGAGCTTGTTGACTGCTGGTGCTGATTTGGGGGATTTGGAGAGTGGTGAGAAGGTGCATGCCAAGATCATGGAGATGAGCAAAGGAAAGTTGAGCACAGTGTTGGGGAATGCTCTTGTTGATATGTATGCCAAGTGTGGAAATATTGGGAAAGCAATTCGTGTGTTTTGGTTGATAAGAGATAAAGATGTGGTTTCGTGGAACTCGGTCATTGGTGGATTGGCCTTTCATGGCCATGCTGAGGAATCACTTGGTCTGTTCAGGGAAATGCAGAGGACCAAGGTTTGTCCAGATGAGATCACCTTTGTTGGCGTTTTGGCAGCTTGTAGTCATGCTGGTAATGTTGATGAGGGTAATCGTTATTTTCATCTTATGAGAAATAAGTACAAGATTGAGCCAAACATTAGGCATTGTGGGTGTGTGGTGGACATGCTAGGGCGTGCTGGACTTTTGAAGGAAGCCTTTGATTTCATAGCCTCCATGAAAATTCAACCTAATGCCATTGTTTGGAGGAGTCTGCTTGGTGCTTGCAAAGTTCATGGAGATGTGGAGTTGGCAAAACGAGCAAATGAGCAGCTGCTTAGAATGAGAAGGGACCACAGTGGTGACTATGTATTGCTATCAAACGTATATGCTTCACAAGGTGAGTGGGATGGGGCTGAGAAGGTAAGGAAGCTAATGGACGACAATGGTGTGACCAAAAATCGCGGCTCTAGCTTTGTTGAGGCATACAGCTGA 1554 0.4762 MIRKRGTTTVTNVGALKQIRALMIVNGFTSNVGFLRKLVLAAAMSMVGPAATTAVTQYALQMFAQIPQPDTFMWNTMIRGSCQCHDPVHAVALYAQMDQRFVKPDNFTFPFVLKACTKLLWINTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATEIFGDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITGYTKHGEMESARRLFDEAPVRDVVSWNAVIGGYVLRGLNREALELFDEMCGVGECPDEVTMLSLLTAGADLGDLESGEKVHAKIMEMSKGKLSTVLGNALVDMYAKCGNIGKAIRVFWLIRDKDVVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFVGVLAACSHAGNVDEGNRYFHLMRNKYKIEPNIRHCGCVVDMLGRAGLLKEAFDFIASMKIQPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRRDHSGDYVLLSNVYASQGEWDGAEKVRKLMDDNGVTKNRGSSFVEAYS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0444 517 TIGRFAM PPR: pentatricopeptide repeat domain 173 203 IPR002885 -
Ssu3g0444 517 TIGRFAM PPR: pentatricopeptide repeat domain 373 406 IPR002885 -
Ssu3g0444 517 TIGRFAM PPR: pentatricopeptide repeat domain 204 232 IPR002885 -
Ssu3g0444 517 TIGRFAM PPR: pentatricopeptide repeat domain 73 105 IPR002885 -
Ssu3g0444 517 TIGRFAM PPR: pentatricopeptide repeat domain 235 269 IPR002885 -
Ssu3g0444 517 TIGRFAM PPR: pentatricopeptide repeat domain 337 371 IPR002885 -
Ssu3g0444 517 Gene3D Tetratricopeptide repeat domain 202 300 IPR011990 GO:0005515
Ssu3g0444 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 104 IPR002885 -
Ssu3g0444 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Ssu3g0444 517 PANTHER OS03G0168550 PROTEIN 184 214 - -
Ssu3g0444 517 Gene3D Tetratricopeptide repeat domain 301 515 IPR011990 GO:0005515
Ssu3g0444 517 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 184 214 - -
Ssu3g0444 517 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 216 515 - -
Ssu3g0444 517 PANTHER OS03G0168550 PROTEIN 216 515 - -
Ssu3g0444 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Ssu3g0444 517 PANTHER OS03G0168550 PROTEIN 9 183 - -
Ssu3g0444 517 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 9 183 - -
Ssu3g0444 517 Pfam PPR repeat 204 228 IPR002885 -
Ssu3g0444 517 Pfam PPR repeat 173 202 IPR002885 -
Ssu3g0444 517 SUPERFAMILY TPR-like 169 494 IPR011990 GO:0005515
Ssu3g0444 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Ssu3g0444 517 Pfam E motif 452 514 IPR046848 -
Ssu3g0444 517 Gene3D Tetratricopeptide repeat domain 131 201 IPR011990 GO:0005515
Ssu3g0444 517 Gene3D Tetratricopeptide repeat domain 16 130 IPR011990 GO:0005515
Ssu3g0444 517 Pfam PPR repeat family 232 278 IPR002885 -
Ssu3g0444 517 Pfam PPR repeat family 69 117 IPR002885 -
Ssu3g0444 517 Pfam PPR repeat family 334 381 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0444 Ssu-Chr3 10192301 10193854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0444 57 514 Glycoside Hydrolase AT3G49170 32.406 9.27e-82 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0444 - - gmx:100790367 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0444 3 10192301 10193854 Ssu6g1245 6 20252697 20254589 ECH
Ssu3g0444 3 10192301 10193854 Ssu3g0444 3 10192301 10193854 ECH