Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1207 ATGGCTGCTTTAGCTCTTGCACTGCTTCTTTTTGCTTTCACCGGCACTTCAAGTGCGAATTGGTGCGTTTGCAAGGATGGAAGCGACGCGATCCTGCAGAAGACGTTGGACTATGCTTGTGGAGCTGGAGCTGACTGTAACCCTCTCCATCAAAACGGGCCGTGTTTCAACCCCAACACCGTTAGGGCCCACTGTAACTATGCCGTCAATAGTTACTTCCAAAAGAAGGGTCAAGCTCAAGGGTCCTGTGAGTTTGCGGGAACAGCCACTGTTACTGCATCTGACCCCAGCAGTAGCGGTTGTGTATACCCTTCAAGCGTCAGCACTGCAGGCACTAGTACAACTCCTGTGACTACTACACCAACCATGGGCACCACTCCTACTACTGGAACTCCAACAACAAGCACCGGCACCGGCACCGGCACCGGCACCGGCACCAGCACTAGCACTGGCACTACTCCATACAGCACAACACCTGGAGTATTAGGAGGGATTGGCAGTGGCATGGGACCTTCAGGATCTGGCATCAATGATGAAAGTCACGGTGGGCTTAGACTTGTAGACAGTAGTTTGTTCTCGATCACCCTCATTTCTGGCTTCATGATGCTCTGCTGGGGTTGA 621 0.5266 MAALALALLLFAFTGTSSANWCVCKDGSDAILQKTLDYACGAGADCNPLHQNGPCFNPNTVRAHCNYAVNSYFQKKGQAQGSCEFAGTATVTASDPSSSGCVYPSSVSTAGTSTTPVTTTPTMGTTPTTGTPTTSTGTGTGTGTGTSTSTGTTPYSTTPGVLGGIGSGMGPSGSGINDESHGGLRLVDSSLFSITLISGFMMLCWG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1207 206 MobiDBLite consensus disorder prediction 107 156 - -
Ssu6g1207 206 Gene3D - 15 115 - -
Ssu6g1207 206 PANTHER BETA-1,3 GLUCANASE 1 200 IPR044788 -
Ssu6g1207 206 Pfam X8 domain 21 90 IPR012946 -
Ssu6g1207 206 PANTHER PLASMODESMATA CALLOSE-BINDING PROTEIN 3 1 200 - -
Ssu6g1207 206 SMART X8_cls 20 103 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1207 Ssu-Chr6 19627880 19632223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1207 16 106 Miscellaneous Gene Families AT2G16230 45.652 7.48e-23 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1207 - - gmx:100500078 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2040 1 57945447 57951839 Ssu6g1207 6 19627880 19632223 ECH
Ssu6g1207 6 19627880 19632223 Ssu6g1207 6 19627880 19632223 ECH