Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2040 ATGGCCGCGTTTGCTCTTGCAGTGCTTCTTTTGGCCTTCATCGGCTCTTCAAGTGCCACTTGGTGCGTTTGCAAGGATGGGAGTGATGCAATACTTCAGAAGACCTTAGACTATGCTTGTGGAGCTGGGGCTGATTGTAACCCAGTCCATCAAAATGGCCCTTGTTTCCAACCCAACACTGTTAGAGCCCACTGTAACTATGCAGTTAACAGCTATTTCCAAAGGAAGGGTCAAGCTCAAGGGTCCTGTGACTTTGCGGGAACCGCCACTGTTACTGCATCAGATCCCAGCACTGCAGGTTGTTCCTACCCTGCAAGCGCCAGCACTGCAGGCACTGCTACAACCACTGGGACAGTCACACCTTCCACTGGCACCACTTCCTCTCCATACAGTTCCACACCTGGAGTATTAGGAGGGATTGGCAGTGGCATGGGCCCTTCTGGAGTTGGCACCAATACAGATGATAGTCATGGTGGGCTTAGACTTGTGGACACTAGTTTGTTCTCACCCTTTTCAATATCCCTCTTTTCGGGCTTTGTGATGATGCTGTGGTGGGGCTGA 561 0.5134 MAAFALAVLLLAFIGSSSATWCVCKDGSDAILQKTLDYACGAGADCNPVHQNGPCFQPNTVRAHCNYAVNSYFQRKGQAQGSCDFAGTATVTASDPSTAGCSYPASASTAGTATTTGTVTPSTGTTSSPYSSTPGVLGGIGSGMGPSGVGTNTDDSHGGLRLVDTSLFSPFSISLFSGFVMMLWWG 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2040 186 Pfam X8 domain 20 90 IPR012946 -
Ssu1g2040 186 MobiDBLite consensus disorder prediction 105 135 - -
Ssu1g2040 186 Gene3D - 16 118 - -
Ssu1g2040 186 PANTHER PLASMODESMATA CALLOSE-BINDING PROTEIN 3 1 176 - -
Ssu1g2040 186 PANTHER BETA-1,3 GLUCANASE 1 176 IPR044788 -
Ssu1g2040 186 SMART X8_cls 20 103 IPR012946 -
Ssu1g2040 186 MobiDBLite consensus disorder prediction 105 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2040 Ssu-Chr1 57945447 57951839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2040 17 120 Miscellaneous Gene Families AT2G16230 43.810 8.14e-24 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2040 - - gmx:100812033 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2040 1 57945447 57951839 Ssu6g1207 6 19627880 19632223 ECH
Ssu1g2040 1 57945447 57951839 Ssu1g2040 1 57945447 57951839 ECH