Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1205 ATGGAGCTTGAGAGTGAGAAGAGTACCAAAAGCAGTGTCAACGGTCAACGCCGCGTGGGTTTACTATACGACGAGAGGATGTGTAAGCACCACATAACAGGCGACAAGTACCATGATGAGACCCCTAATCGAATTAGGGCTATTTGGAACAAACTCGAAAGCGCCGGCATTCCCGGCCGATGTGTGATTTTGGAAGCCAAAGAAGCTGAAGACAAGcatatactgttagtgcatTCCAAAAATCATGTAGAGCTGATTAAGAACATAAGCTCAAAGCGGTTCGACTCGCAGAGGCACAAGATTGCCTCGAAATTgaattctatatattttaacgAAGGTTCATCAGAAGCTGCTTACTTTGCTGCTGGTTCTGCGGTTGAGGTTGTTAAAAGAGTGGCAAGCAGGGAATTGGATTCTGCTGTTGCCATTATTAGGCCTCCAGGTCATCATGCAGAACATAATGAAGCTATGGGATTTTGTCTGTTCAACAATGTGGCAATTGCTGCAAGATATCTCTTAGATGAAAGACCAGAATTAGGtgtgaagaaaattttaattgttgattggGATGTCCATCATGGAAATGGTACTCAAAAAATGTTCTGGAATGATTCTCGAGTTTTATTCTTCTCCGTTCACAGGCATGACTTTGGGAGTTTTTATCCAGCTAAGGATGATGGATTTTATACCATGATTGGAGAAGGAGCAGGTGCTGGATATAATATAAATGTCCCCTGGGAGAATGGGAGATGTGGTGATGCTGATTACTTTGCAGTGTGGGACCACATCTTGCTTCCTGTGGCCAAAGAATTTAATCCAGACATAATTATAGTTTCTGCTGGATTTGATGCAGCTGTTGGTGACCCTCTGGGAGGATGTCGTGTCACACCATTTGGTTACTCTGTTCTGTTGAAAAAGTTGATGAATTTTGCTGAAGGGAGGATTGTACTGATTTTAGAAGGAGGATATAATCTTGATTCCATTGCAAAATCAATGCATGCTTGTGTGGAAGTTTTGCTAGAAGACAAGCCTGTTATTGGATCCTCGGAGGCCTATCCATTTGAGTCTACATGGCGTGTGATTCAAGCGGTTTGCCAGAAGTTAAGTCCCTTTTGGCCTACACTTGCATGTGAATTACCGCAAAAGTTAATCTCACAAATGGCACCACCTATGcctttGCAGCATACTCTTATCTTGAGCTCTGAGGCTGAGGATAATAAGGGTGCACCAAGTTCAGAAAATCTTGGAGAACTTCTTGAGGATGTCATAAAACCACTTTCCAAACTGAAAGTTGATACCGATGAAGAGACTGATGTTTCTAGTTCTTGGCGATCTGAATTGtcaaatgtttatatatggTATGCCTCATATGGATCAAATATGTGGAAAGCCAGATTATATTGCTACCTAGCAGGTGGACAGGTGGAAGGTATGCAAAAGCACTGTCCTGGTTCAATGAATGGAACTCTGCCAAAGGAGATCCTGTGGAAGACTTTCCcttgtcatatattttttggtcGTGATTCATCGCGTTCATGGGGTCCAGGAGGCGTTGCATTTCTTAATCCTGaaaaaaattttcaacacaACACCTACATGTGCCTGTACAAAATTTCGCTAGAGCAGTACAACGATATTTTATTTCAGGAAAATGGTTTAAGCCTTAATGCAGACTCTCCTTTATTTGATATAACTACCCTGAATGCTATCTCTGGCAAGGAATTCAACTCTCTAGAGGTTGTCAAGGGTTCTTGGTATGGTAATGCTGTCTACTTAGGAAAGGAGCAGCAGATTCCAATAATGACCATGACGTGTTCACTTCTTGATATTGAACGTTTCAAATCTGGGAAGCTACCATCATGTGCCCCTAATAAAGCGTATGCCAACACCTTAATAAAAGGATTGGTAGAGGGAGAACAACTTCCGGAGGCGGAAGCCATCACTTACATAGAAGGTGCTGCTAAATCGTTGTGA 1974 0.4032 MELESEKSTKSSVNGQRRVGLLYDERMCKHHITGDKYHDETPNRIRAIWNKLESAGIPGRCVILEAKEAEDKHILLVHSKNHVELIKNISSKRFDSQRHKIASKLNSIYFNEGSSEAAYFAAGSAVEVVKRVASRELDSAVAIIRPPGHHAEHNEAMGFCLFNNVAIAARYLLDERPELGVKKILIVDWDVHHGNGTQKMFWNDSRVLFFSVHRHDFGSFYPAKDDGFYTMIGEGAGAGYNINVPWENGRCGDADYFAVWDHILLPVAKEFNPDIIIVSAGFDAAVGDPLGGCRVTPFGYSVLLKKLMNFAEGRIVLILEGGYNLDSIAKSMHACVEVLLEDKPVIGSSEAYPFESTWRVIQAVCQKLSPFWPTLACELPQKLISQMAPPMPLQHTLILSSEAEDNKGAPSSENLGELLEDVIKPLSKLKVDTDEETDVSSSWRSELSNVYIWYASYGSNMWKARLYCYLAGGQVEGMQKHCPGSMNGTLPKEILWKTFPCHIFFGRDSSRSWGPGGVAFLNPEKNFQHNTYMCLYKISLEQYNDILFQENGLSLNADSPLFDITTLNAISGKEFNSLEVVKGSWYGNAVYLGKEQQIPIMTMTCSLLDIERFKSGKLPSCAPNKAYANTLIKGLVEGEQLPEAEAITYIEGAAKSL 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1205 657 PANTHER BNAA09G05590D PROTEIN 6 612 - -
Ssu6g1205 657 PANTHER HISTONE DEACETYLASE 6 612 - -
Ssu6g1205 657 Pfam Histone deacetylase domain 38 338 IPR023801 -
Ssu6g1205 657 Gene3D Histone deacetylase domain 11 388 IPR037138 -
Ssu6g1205 657 SUPERFAMILY Arginase/deacetylase 17 373 IPR023696 -
Ssu6g1205 657 Gene3D - 440 655 - -
Ssu6g1205 657 PRINTS Histone deacetylase superfamily signature 146 169 IPR000286 -
Ssu6g1205 657 PRINTS Histone deacetylase superfamily signature 273 283 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1205 Ssu-Chr6 19612103 19618492 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1205 K11406 - gmx:100788831 1192.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1205 6 19612103 19618492 Ssu6g1205 6 19612103 19618492 ECH
Ssu6g1205 6 19612103 19618492 Ssu1g2105 1 59995016 59997114 PCT