Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1153 ATGTCACGCACTCGCATTGCCATTCACCGCTTCCGCTACAGCTACACCGCATTATCGTCAATCCTCTCGTCACCATCTGCAATTACTCGCTCTCAATTCCAATGTCCCCAACTCACGCGCGCACCACTCCCTTTCCTCTTCCACCCTCCTCGTTATTCTTCATCCACCCCCAAACAAGACTTGGTCGGTGGCGACGAGCATTATCCCAGTGGAGACTTTGATTTCAAGCCCGTCACAGGCTGGAATAAATTTATGGTCAAGCTGAAGATGCTAGCAGCCTTCCCCTGGGAGCGTCTCCGATACGGCACCGTCTTGACAATCAAGTTGCGCGGCCAGGTATCGGATCAGCTGAAGAGTAGGTTCTCCCCGGGATTATCTCTGCCTCAAATCTCTGATAATTTCTTGAAGGCAGCGTATGACCCTCGAATTTCCGGTATCTATCttcatattgatattttaaattgcgGTTGGGCCAAGGTCGAAGAAATTCGAAGGCacatattgaatttcaaaaaatcagGAAAATTTATTGTGGCTTATGTCCCTTCATTTcgagaaaaagaatattatattgCATGCGCCTGTGAAGAGATTTATGCACCTCCAAgtgcttatttttctttgtttggatTGACTGTTCAAGCCCCATTCCTCAGAGGTGTTTTAGAGAATCTTGGAATTGAACCAGAAGTGGAAAGGATTGGCAAATACAAAAGTGTAGGAGATCAGCTAACCCGTAGAACCATGTCTGAAGATCATCATGAGATGCTTACTGCATTGCTAGATAATATCTATACAAATTGGCTGGACAAAGTCTCTTCTGCTAGAGgaaagaaaagagaagatatTCAGAACTTCATAAATGACGGTGTCTATCAAGTTGAGAGACTTAAAGAAGAGGGCTTCATATCAGACATAATCTATGATGACGAGGTTATCACTAGGTTGAAGGAGAGACTTCAagttaaaacaaatgaaaatctGCCTATGGTTGATTACagAAAATACTCTGGAGTTAGGAAATCAACTCTTGGACTATCAGGTGGTAAAGAATTAATAGCCATCATCCGAGCTTCAGGGAGTATTCGTCGTATCAAGAGTCCATTAGGTGCCCGTACCTCAGGTATCATTGGAGAGAAGTTCATTGAGAAGATACGCAGAGTTAGAGagtcaaataaatataaggcTGCCATTATCCGAATTGACAGTCCAGGAGGGGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAAAACCAGTCATTGCGTCAATGTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTTGCTGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGgtAAATTTAACCTTGGGAAACTTTATGAGAAGATTGGCTTCAACAAAGAAATCATATCAAGGGGTAGATATGCTGAGCTCCGTGCAGCTGAACAGCGTTCTTTTAGACCAGATGAAGCAGAGCTATTTTCCAAGTCTGCGCAGCATGCTTATAAACAATTTCGAGATAAGGCAGCTTTATCCAGATCTACGACtGTAGAAAAGATGGAAGAGGTTGCACAGGGGAGGGTTTGGACCGGTAAGGAGGCAGCTTCTCATGGTTTGGTTGATGCTATTGGTGGCCTTTCTCGAGCTATTGCCATAGCAAAATTGAAGGCCGATATACCTCAAGACAGACAGGTTACTGTTGTGGAGCTCTCGAGACCCAGCCCTTCTCTACCCGATATTTTAAGTGGTCTAGGTAATTCTCTCGTCGGAGTGGACAGAACTTTAAATGAATTACTACAGGACTTGACATTTTCCCATGGAGTCCAAGCACGGATGGACGGAATCTTGTTTGAGAAACTGGAAGGATATCCATACGCCAACCCCATTTTGGCACTGATGAAAGATTATCTTAGTTCCCTGTAG 1962 0.419 MSRTRIAIHRFRYSYTALSSILSSPSAITRSQFQCPQLTRAPLPFLFHPPRYSSSTPKQDLVGGDEHYPSGDFDFKPVTGWNKFMVKLKMLAAFPWERLRYGTVLTIKLRGQVSDQLKSRFSPGLSLPQISDNFLKAAYDPRISGIYLHIDILNCGWAKVEEIRRHILNFKKSGKFIVAYVPSFREKEYYIACACEEIYAPPSAYFSLFGLTVQAPFLRGVLENLGIEPEVERIGKYKSVGDQLTRRTMSEDHHEMLTALLDNIYTNWLDKVSSARGKKREDIQNFINDGVYQVERLKEEGFISDIIYDDEVITRLKERLQVKTNENLPMVDYRKYSGVRKSTLGLSGGKELIAIIRASGSIRRIKSPLGARTSGIIGEKFIEKIRRVRESNKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGVIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAELRAAEQRSFRPDEAELFSKSAQHAYKQFRDKAALSRSTTVEKMEEVAQGRVWTGKEAASHGLVDAIGGLSRAIAIAKLKADIPQDRQVTVVELSRPSPSLPDILSGLGNSLVGVDRTLNELLQDLTFSHGVQARMDGILFEKLEGYPYANPILALMKDYLSSL 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1153 653 CDD S49_SppA_67K_type 105 318 - -
Ssu6g1153 653 PIRSF Protease_4_SppA 43 653 IPR004634 GO:0006465|GO:0008233|GO:0016021
Ssu6g1153 653 PANTHER PROTEASE 4 38 652 - -
Ssu6g1153 653 CDD S49_Sppa_N_C 353 567 IPR002142 GO:0006508|GO:0008233
Ssu6g1153 653 Pfam Peptidase family S49 421 571 IPR002142 GO:0006508|GO:0008233
Ssu6g1153 653 Pfam Peptidase family S49 170 322 IPR002142 GO:0006508|GO:0008233
Ssu6g1153 653 Gene3D - 349 498 - -
Ssu6g1153 653 SUPERFAMILY ClpP/crotonase 356 558 IPR029045 -
Ssu6g1153 653 Gene3D - 213 277 - -
Ssu6g1153 653 Gene3D - 503 617 - -
Ssu6g1153 653 Gene3D - 100 212 - -
Ssu6g1153 653 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 354 566 IPR004635 GO:0006508|GO:0008233
Ssu6g1153 653 SUPERFAMILY ClpP/crotonase 94 308 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1153 Ssu-Chr6 18780162 18801348 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1153 K04773 - gmx:100809623 1120.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1153 6 18780162 18801348 Ssu6g1153 6 18780162 18801348 ECH
Ssu6g1153 6 18780162 18801348 Ssu1g1991 1 56359263 56376944 PCT