Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1991 ATGCTCTTGCTTCTGATTTGTAAGTTCTGGATGTGGAGAGAAATTCGGCTTTTGGCTGCTTCAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCTGATGCTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCGATTGGAGTGGTCACAGGAAAATTTAACCTGGGGAAACTGTATGAGAAGATCGGCTTTAACAAAGAAATTATATCAAGGGGAAGATATGCTGAGCTCCTTGCTGCTGAACAACGTCCTTTcagGCCAGATGAAGCAGAACTATTTGCCAAATCTGCTCGGCATGCTTATAAACAATTTCGAGACAAGGCAGCTTTGTCCAGATCAATGGCTGTAGAAAAGATGGAGGAGGTTGCACAGGGAAGGGTTTGGACTGGTAACGATGCAGCTTCGCATGGTTTAGTTGATGCTATTGGTGGGCTTTCTCGAGCTATTGCCATAGCAAAAATGAAGGCCAATATACCTCAAGACAGACAGGTTACTCTTGTGGAGATCTCCAGACCCAGCCCTTCTCTACCCGAGATTTTATTAGGCATAGGGAATTCCCTCGTTGGAGCTGACAGAACAGTGAAGGAACTGCTACAGGGCTTAACATTTCCGGAAGGAGTTCAAGCGCGGATGGATGGAATCATGTTTCAGACATTGGAAGAATATCCTTTTGGCAACCCTATTCTGTCAATAATAAAAGATTACCTGAGTTCCCTGTAG 753 0.4436 MLLLLICKFWMWREIRLLAASKPVIASMSDVAASGGYYMAMGADAIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAELLAAEQRPFRPDEAELFAKSARHAYKQFRDKAALSRSMAVEKMEEVAQGRVWTGNDAASHGLVDAIGGLSRAIAIAKMKANIPQDRQVTLVEISRPSPSLPEILLGIGNSLVGADRTVKELLQGLTFPEGVQARMDGIMFQTLEEYPFGNPILSIIKDYLSSL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1991 250 Pfam Peptidase family S49 18 168 IPR002142 GO:0006508|GO:0008233
Ssu1g1991 250 Gene3D - 10 94 - -
Ssu1g1991 250 SUPERFAMILY ClpP/crotonase 11 155 IPR029045 -
Ssu1g1991 250 Gene3D - 98 220 - -
Ssu1g1991 250 PANTHER PROTEASE 4 10 249 - -
Ssu1g1991 250 CDD S49_Sppa_N_C 11 164 IPR002142 GO:0006508|GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1991 Ssu-Chr1 56359263 56376944 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1991 K04773 - gmx:100781522 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1991 1 56359263 56376944 Ssu1g1991 1 56359263 56376944 ECH
Ssu6g1153 6 18780162 18801348 Ssu1g1991 1 56359263 56376944 PCT