Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1134 ATGTCAAAGCTTCAAGTTCACCAACTTAATCAGTTAAGGGAGATTTTCGCTCGATTTGACATGGACTCGGATGGGAGCCTAACAATGTTAGAGCTAGCAGCGCTTCTTAGGTCTCTGGGGCTGATGCCCTCGGGTGACCAAGTCCAAGCCCTGTTAGCCAACATGGACTCAAACGGCAATGGGAAAGTGGAGTTTGACGAGTTGGTGAGGGCCATATTGCCTGACATAAATGCACAGATATTGCTGAATCAAGAACAGCTCCTGGGGGTGTTCAAGTGCTTTGATCGCGATGGAAATGGTTACATATCAGCCGCAGAGTTGGCCGGGGCAATGGCCAAAATGGGTCAGCCCCTCACGTATCGAGAGCTAACGGAGATGATCAAAGAGGCTGACACAGATGGTGATGGGGTAATTAGCTTCACTGAGTTTGCCTCTATAATGGCTCGCTCTGCTACTGATATCTTAGGCCTCTCATTGTGGTGA 483 0.4907 MSKLQVHQLNQLREIFARFDMDSDGSLTMLELAALLRSLGLMPSGDQVQALLANMDSNGNGKVEFDELVRAILPDINAQILLNQEQLLGVFKCFDRDGNGYISAAELAGAMAKMGQPLTYRELTEMIKEADTDGDGVISFTEFASIMARSATDILGLSLW 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1134 160 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Ssu6g1134 160 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Ssu6g1134 160 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Ssu6g1134 160 Gene3D - 86 155 - -
Ssu6g1134 160 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Ssu6g1134 160 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Ssu6g1134 160 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 3 158 - -
Ssu6g1134 160 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Ssu6g1134 160 SUPERFAMILY EF-hand 4 149 IPR011992 -
Ssu6g1134 160 SMART efh_1 122 150 IPR002048 GO:0005509
Ssu6g1134 160 SMART efh_1 11 39 IPR002048 GO:0005509
Ssu6g1134 160 SMART efh_1 86 114 IPR002048 GO:0005509
Ssu6g1134 160 SMART efh_1 47 75 IPR002048 GO:0005509
Ssu6g1134 160 CDD EFh 86 148 IPR002048 GO:0005509
Ssu6g1134 160 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Ssu6g1134 160 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Ssu6g1134 160 PANTHER CALCIUM BINDING PROTEIN 3 158 - -
Ssu6g1134 160 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Ssu6g1134 160 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Ssu6g1134 160 Gene3D - 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1134 Ssu-Chr6 18541874 18542356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1134 8 159 EF-hand Containing Proteins AT1G18530 77.632 5.73e-85 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1134 K13448 - gmx:100795885 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1978 1 55480450 55480932 Ssu6g1134 6 18541874 18542356 ECH
Ssu6g1134 6 18541874 18542356 Ssu6g1134 6 18541874 18542356 ECH