Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1978 ATGTCAAAACTTCAAGTTGATCAACTAGATCAATTAAGGGAAATTTTTGCAAGATTTGACATGGATTCAGATGGCAGCCTAACAATTTTGGAGCTCGCCGCGCTCCTTCGGTCGCTGGGGCTAAAGCCCTCGGGTGACCAAATCCATGTGTTGTTGGCCAACATGGATTCAAATGGTAATGGCTCTGTGGAGTTTGACGAGTTGGTGGATGCAATATTGCATGACATAAGTGCAGAGATATTGTTGAACCAAGAAATTCTCCTTGGGGTATTCAAATGTTTTGATCGTGATGGGAATGGTTTTATTTCAGCGGCAGAGTTGGCAGGGGCAATGGCCAAGATGGGTCAACCCCTTACGTACAGAGAGCTCACAGAGATGATCACAGAGGCAGACACAGATGGTGATGGTGTGATTAGTTTCAATGAGTTTGCCACTGTGATGGGTAGGTCAGCCTCTGACTTCTTGGGCATTGCACTGTCATAA 483 0.4555 MSKLQVDQLDQLREIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDSNGNGSVEFDELVDAILHDISAEILLNQEILLGVFKCFDRDGNGFISAAELAGAMAKMGQPLTYRELTEMITEADTDGDGVISFNEFATVMGRSASDFLGIALS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1978 160 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Ssu1g1978 160 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Ssu1g1978 160 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 3 158 - -
Ssu1g1978 160 SMART efh_1 11 39 IPR002048 GO:0005509
Ssu1g1978 160 SMART efh_1 86 114 IPR002048 GO:0005509
Ssu1g1978 160 SMART efh_1 47 75 IPR002048 GO:0005509
Ssu1g1978 160 SMART efh_1 122 150 IPR002048 GO:0005509
Ssu1g1978 160 PANTHER CALCIUM BINDING PROTEIN 3 158 - -
Ssu1g1978 160 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Ssu1g1978 160 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Ssu1g1978 160 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Ssu1g1978 160 Gene3D - 1 151 - -
Ssu1g1978 160 Pfam EF-hand domain pair 90 147 IPR002048 GO:0005509
Ssu1g1978 160 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Ssu1g1978 160 CDD EFh 90 147 IPR002048 GO:0005509
Ssu1g1978 160 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Ssu1g1978 160 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Ssu1g1978 160 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Ssu1g1978 160 SUPERFAMILY EF-hand 3 147 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1978 Ssu-Chr1 55480450 55480932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1978 7 160 EF-hand Containing Proteins AT1G18530 76.623 4.75e-84 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1978 K13448 - aprc:113851957 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1978 1 55480450 55480932 Ssu6g1134 6 18541874 18542356 ECH
Ssu1g1978 1 55480450 55480932 Ssu1g1978 1 55480450 55480932 ECH