Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1121 ATGAGGGAAGATGTAAGAGCATTGTTAGAACAGGTTTCTTCCAAGTTGTCCATTACACTTGATTTCTGGACCTCCTTTGAACAGATCTACTACATGAGTGTAACATGTCAGTGGATTGACGAAAACTGGTGCTTCCAGAAGTTGCTTCTTGATATATGTCGCATACCCTATCCATGTGGGAGTGCAGAGATCTTTCGTTCCCTcgtaaaaattcttaaattttacaatattgaaAACAGAATCCTGTCCTGTACCCATGATAATAGTACAAGTGTCATGCATGCCTGCCATTCTTTGAAAGAGGACTTGGATGGTCAGAAAATAGGGCCGTTCTGTTATATTCCCTGTGCTGCTCGAACTTTGAATGTGATAATAGAAGATGGATTGAGATCCGCAAAACAAGTAATTTCTAAGATACGGGAGTTTGTAATAGAGTTAAATGCCTCACCAGTGATCTCTGaggattttattcaattatccACAGCTTATCAAGAAGGTACATGGAAATTTCCTCTTGATGTTTCAGCAAGGTGGAGTGGAAACTACCAAATGCTTGATCTTGTTCGCAAGGCAGGTAAATCAGTGGATGCTGTTATTCGTAAATACGAGGAAATGCTAGGCAGTAGGATGCTGCTGGGATCTTCTGACAAAAGTGTGGTTAACATCATGCATCAATATCTTGAACCATTCTACAAAACCACAAACAACATCTGCACAAGTAAGGTGCCAACGGTTGGGCTTGTCCTTTTCTTCATGGATCACATCTCAGAAACAATTGGTTCCTGCAGAGAATCGCGTCACAGCCCAGAATGGCTAAAAAGTGCTGCAGAAGAAATGGCTAAAAAGGccagaaattatattaatcaggTTTGCAACATATTTACTTATATGACAGCAATTCTAGATCCTCGAATAAAGGGGGAGCTGATCCCTGATAGTTTAAACTCAGAAAATTTTTTGGACGAAGCAAGAACCCattttatgagaaattattcTACCAGCCATTTCTCATCCATGAGTTCTGGATACAATGCTCAAGAAATTGAAGATGCAGGAAGTGTTTCCTTTGCTGAGGAAATAGCACGCAAAAAGCGAAGGACAAGCATGAGCTCTGCCACTGATGAGCTTACACAGTACCTATCAGAGGCTCCTGCTCCAATACCAACAGATGTTCTAGACTGGTGGAAGGTCAACAGTACACGCTACCCTCGACTATCTGTGATGGCTAGAGATTTCCTGGCTGTGCAGGCAACTTCAGTAGTGCCTGAAGAACTTTTCTGTGGCAAGGGTGATGAAATTGACAAGCAACGACTTTGTATGCCATATGATAACACCCAAGCTATTCTTTGTATCAAGTCATGGATTCAGGTTGGCATCAAGTTTAAGTTTAAATCAACCGAGATAGATTACGAGAGGTTGATGGAACTGGCAGCTGCAGCTGCTGCAACAGATAGTAGTCCTGCAAGTTCTGACAAGAAGCAAAAATAA 1488 0.3985 MREDVRALLEQVSSKLSITLDFWTSFEQIYYMSVTCQWIDENWCFQKLLLDICRIPYPCGSAEIFRSLVKILKFYNIENRILSCTHDNSTSVMHACHSLKEDLDGQKIGPFCYIPCAARTLNVIIEDGLRSAKQVISKIREFVIELNASPVISEDFIQLSTAYQEGTWKFPLDVSARWSGNYQMLDLVRKAGKSVDAVIRKYEEMLGSRMLLGSSDKSVVNIMHQYLEPFYKTTNNICTSKVPTVGLVLFFMDHISETIGSCRESRHSPEWLKSAAEEMAKKARNYINQVCNIFTYMTAILDPRIKGELIPDSLNSENFLDEARTHFMRNYSTSHFSSMSSGYNAQEIEDAGSVSFAEEIARKKRRTSMSSATDELTQYLSEAPAPIPTDVLDWWKVNSTRYPRLSVMARDFLAVQATSVVPEELFCGKGDEIDKQRLCMPYDNTQAILCIKSWIQVGIKFKFKSTEIDYERLMELAAAAAATDSSPASSDKKQK 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1121 495 Pfam hAT family C-terminal dimerisation region 375 455 IPR008906 GO:0046983
Ssu6g1121 495 SUPERFAMILY Ribonuclease H-like 2 457 IPR012337 -
Ssu6g1121 495 Pfam Domain of unknown function (DUF4413) 238 317 IPR025525 GO:0003677
Ssu6g1121 495 PANTHER BED ZINC FINGER AND HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 1 465 - -
Ssu6g1121 495 PANTHER BED FINGER-RELATED 1 465 IPR045259 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1121 - - ahf:112708868 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1121 6 18317852 18319732 Ssu6g1121 6 18317852 18319732 ECH
Ssu6g1121 6 18317852 18319732 Ssu1g1887 1 50003420 50006611 PCT