Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1026 ATGAAATTCGGGAAGAGCCTGAGCAGCCAGATCGAAAAAACCCTGCCGGAATGGCGCGACAAGTTCCTCTCCTACAAGGAGCTCAAGAAGAAGCTCAAGCAATTCGACCCTCCCGCAGCCGATGAACGCCCCGGCAAGCGCCTCAGGGCCGACGCCGGCAACGGCGAACCCGCCCCCGACGCCGCCGCCGACATGTCCAAGGAGGAGAGCTACTTCCGGAGCTTGCTGGAGAATGAACTCGACAAATTCAACACCTTCTTCGTCGAGAAGGAGGAAGAGTATATTATCAGACTCAAGGAGTTACAAGATAGGGTGGCCAAAGTTAAGGATTCTAGTGAAGAGATGATGAAAATGCGCAAGGAAATTGTGGATTTCCACGGAGAGATGATCTTGCTGGAGAACTACAGTGCCCTTAACTATACAGGGCTAGTGAAAATACTGAAGAAGTATGACAAGAGAACTGGTGCTCTCATTCGCTTGCCCTTCATTCAGAAAGTCTTGCAACAACCTTTCTTTACCACTGACTTGCTCTACAAGCTTGTAAAGGAGTGTGAAACAATGCTGGACCGCCTTTTCCCTGTGAATGATTCTCCTCCAGTTTCTGGTGAGACAACTCCCCAAGCTGAAGGTTGTGATCCTTCAACTTCAACCACCACCAAGAGTGATGGTTTGCTGATTCCTAAGGAATTAGCTGAGATCGAGTACATGGAGAGCCTTTATATGAAGAGTACCATATCAGCTTTGCATGTTTTGCAGGAAATTCGAAGTGGAAGCTCAACAGTTAGCATGTTTTCATTGCCACCTTTGAAGATAAGTGGTTCAGAAGAAGCATGGAAGAAAATCCCGGTTCTGGAACAAGCAGCCAAGTAA 870 0.4805 MKFGKSLSSQIEKTLPEWRDKFLSYKELKKKLKQFDPPAADERPGKRLRADAGNGEPAPDAAADMSKEESYFRSLLENELDKFNTFFVEKEEEYIIRLKELQDRVAKVKDSSEEMMKMRKEIVDFHGEMILLENYSALNYTGLVKILKKYDKRTGALIRLPFIQKVLQQPFFTTDLLYKLVKECETMLDRLFPVNDSPPVSGETTPQAEGCDPSTSTTTKSDGLLIPKELAEIEYMESLYMKSTISALHVLQEIRSGSSTVSMFSLPPLKISGSEEAWKKIPVLEQAAK 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1026 289 MobiDBLite consensus disorder prediction 198 221 - -
Ssu6g1026 289 MobiDBLite consensus disorder prediction 34 65 - -
Ssu6g1026 289 MobiDBLite consensus disorder prediction 195 221 - -
Ssu6g1026 289 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 289 IPR031142 GO:0016036
Ssu6g1026 289 MobiDBLite consensus disorder prediction 34 50 - -
Ssu6g1026 289 ProSiteProfiles SPX domain profile. 1 164 IPR004331 -
Ssu6g1026 289 CDD SPX_AtSPX1_like 2 153 - -
Ssu6g1026 289 Pfam SPX domain 114 166 IPR004331 -
Ssu6g1026 289 Pfam SPX domain 1 35 IPR004331 -
Ssu6g1026 289 Coils Coil 91 118 - -
Ssu6g1026 289 PANTHER SPX DOMAIN-CONTAINING PROTEIN 2 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1026 Ssu-Chr6 16782908 16785227 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1026 - - gmx:100787780 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1026 6 16782908 16785227 Ssu6g1026 6 16782908 16785227 ECH
Ssu6g1026 6 16782908 16785227 Ssu1g1896 1 51018179 51023204 PCT