Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1896 ATGAAATTCGGAAAGAGCCTGAGCAACCAGATCGAGAAAACACTGCCCCAATGGCGCGACAAGTTCCTGTCCTACAAGGAACtcaagaagaaattgaagcTCGTCGAACCCGCCCCCAAACCCGGCGAGGAACGCCCTACCAAACGCGCAAGGCTCGATGGGGACATGCCCAAGGAGGAAACCGACTTCAGGAACTCGCTCGAACATGAACTCGACAAATTCAACACCTTCTTCGTTGAGAAAGAGGAAGAGTGCATCATCAAATTGAAGGAGCTACAAGATAGGGTGGCCAAAGTAAAAGATTCTAATGAGCAATTAATGCAAATTCGCAAGGAAATTGTGGATTTCCATGGAGAGATGGTCTTGCTCGAAAACTATAGTGCCCTTAACTACACAGGACTAGTGAAAATACTAAAGAAGTATGACAAGAGAACTGGTGCTCTCATTCGGTTGCCTTTCATTCAGAAGGTATTGCAACAGCCTTTCTTTACCACTGACCTGCTCTACAAACTTGTGAAGGAGTGTGAAACAATGCTGGACCACCTTTTCCCGGCGAATGATCCTTCAACTTCCGGGGAGGCACCTCCCCAAGCTGAGGGGTGTTATGCTTCAACTTCAACCAGCACAAAGAGTGATGGTCTGATGATGCATAAGGAGTCAGCAGCCATCCAACATATTGAGAGCCTCTATATGAAGAGTTCCATATCAGCTCTGCATGTTTTGCAGGAAATTAGAAAGGGAAGCTCAACAGTTAGCATGTTTTCATTACCACCATTACAGTTAAGTGGCTTGGAAGAAACATGGAACAAAATCCCAATTCTGGAACAAACAGCCAACCCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGGGTCTTGCAATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACACCTCCGTTACCTTTGGGGAGGCCTACGCCCCATAG 999 0.4745 MKFGKSLSNQIEKTLPQWRDKFLSYKELKKKLKLVEPAPKPGEERPTKRARLDGDMPKEETDFRNSLEHELDKFNTFFVEKEEECIIKLKELQDRVAKVKDSNEQLMQIRKEIVDFHGEMVLLENYSALNYTGLVKILKKYDKRTGALIRLPFIQKVLQQPFFTTDLLYKLVKECETMLDHLFPANDPSTSGEAPPQAEGCYASTSTSTKSDGLMMHKESAAIQHIESLYMKSSISALHVLQEIRKGSSTVSMFSLPPLQLSGLEETWNKIPILEQTANPRWRRADIEVPNLPVDVGLAIKLPSAFALEGQSPSGPRKPLHTSVTFGEAYAP 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1896 332 ProSiteProfiles SPX domain profile. 1 155 IPR004331 -
Ssu1g1896 332 Coils Coil 89 109 - -
Ssu1g1896 332 Pfam SPX domain 1 40 IPR004331 -
Ssu1g1896 332 Pfam SPX domain 108 157 IPR004331 -
Ssu1g1896 332 MobiDBLite consensus disorder prediction 35 59 - -
Ssu1g1896 332 MobiDBLite consensus disorder prediction 186 206 - -
Ssu1g1896 332 MobiDBLite consensus disorder prediction 310 332 - -
Ssu1g1896 332 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 278 IPR031142 GO:0016036
Ssu1g1896 332 PANTHER SPX DOMAIN-CONTAINING PROTEIN 2 1 278 - -
Ssu1g1896 332 CDD SPX_AtSPX1_like 2 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1896 Ssu-Chr1 51018179 51023204 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1896 - - gmx:100790400 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1026 6 16782908 16785227 Ssu1g1896 1 51018179 51023204 PCT